Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_D01
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 394 NLYSYRCWQIDLLHRREKPENHLQIH 317
           N   Y C ++DLL +RE     +QI+
Sbjct: 224 NTGEYSCLKVDLLFKREFSYYLIQIY 249


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 394 NLYSYRCWQIDLLHRREKPENHLQIH 317
           N   Y C ++DLL +RE     +QI+
Sbjct: 224 NTGEYSCLKVDLLFKREFSYYLIQIY 249


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 224 PVLSHQRYSPCCIE 265
           P   H++Y PCC E
Sbjct: 207 PAERHKKYYPCCDE 220


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 175 NEHIISHSLLDYQKPANYPTPRI 107
           N++II+H +L+Y    +   PRI
Sbjct: 786 NQNIITHMILNYVGSEDSVIPRI 808


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,973
Number of Sequences: 438
Number of extensions: 4100
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)