Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_C07
         (864 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)                 31   1.2  
SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40)                 30   2.8  
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)
          Length = 406

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 462 GLRGEEFALPAITLLEERARELEPFXVTLQVSHKG-LKIIQNVTAKGKQQTIXHFIP 629
           GL G +  +PA+  + +++ EL    V + + H+G L ++ NV  K  +Q    F P
Sbjct: 223 GLEGCDVLVPAMKAIIDKSSELGVESVVMGMPHRGRLDVLANVCRKPLEQIFTQFDP 279


>SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40)
          Length = 382

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 450 QESRGLRGEEFALPAITLLEERARELEPFXVTLQVSHKG-LKIIQNVTAKGKQQTIXHF 623
           Q+   L G E A+PA+  L E A E       + ++H+G L ++ N+  K  Q     F
Sbjct: 54  QKRFSLEGCESAIPALDALIEGAAERGVEQFVMGMAHRGRLNVLANIFGKNTQNIFSEF 112


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 561  YVKPAT*P*RVPTPLLSPRVT*SPVAQTPRPADREIPEPRGTKRNTTLS 415
            Y+   T P   P P  SP  T  PV   PRP   E P+ RG    +T++
Sbjct: 1568 YIGSTTLPITPPPPTPSPPQTPPPVNTPPRPETPE-PQYRGNIDTSTVT 1615


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,415,192
Number of Sequences: 59808
Number of extensions: 337868
Number of successful extensions: 682
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)