Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P19
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26426| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   3e-18
SB_9982| Best HMM Match : No HMM Matches (HMM E-Value=.)               71   1e-12
SB_29748| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.051
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)                30   2.5  
SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_32378| Best HMM Match : DUF591 (HMM E-Value=1.6)                    23   6.8  

>SB_26426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 42/67 (62%), Positives = 50/67 (74%)
 Frame = -1

Query: 320 IHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKSVSGGASGNPEEERRAQFY 141
           I+ETV+TIN LK NREFFL F++DPQ FI +W+ SQS+DLK V     GNPEEERRA FY
Sbjct: 1   IYETVETINSLKINREFFLGFARDPQDFITQWIQSQSQDLK-VMTDVVGNPEEERRADFY 59

Query: 140 CAGWAGE 120
              W+ E
Sbjct: 60  YLPWSQE 66


>SB_9982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 34/57 (59%), Positives = 44/57 (77%)
 Frame = -1

Query: 491 PDPXVINHVIAVEPPHDAKQTAXYDIDVEVDDTLKAQMNNFLXSTANQQEIQGLDSK 321
           PDP VI+H+I+ + P + K+   YDIDVEVDDTLKAQM++FL STA+Q EI   D+K
Sbjct: 197 PDPIVIHHLISKDTPEN-KRVTCYDIDVEVDDTLKAQMHSFLLSTASQNEIATYDNK 252


>SB_29748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 33

 Score = 35.5 bits (78), Expect = 0.051
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 554 FGAPRVKXAEVPARXXALXHAPDPXVINHVI 462
           F  PR+K +E+P R   L   PDP VI+H+I
Sbjct: 2   FECPRMKFSEIPQRLNQLLVPPDPIVIHHLI 32


>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
          Length = 515

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 354 QPAGDPRPRLQDPRDCGHHQPVENKPR 274
           QPA +PRP  QDPR     +P   +PR
Sbjct: 390 QPAHNPRPGPQDPRGPQDRRPPNEQPR 416


>SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -1

Query: 545  PRVKXAEVPARXXALXHAPDPXVINHVIAVEPPHDAKQTAXYDIDVEVDD 396
            PR +  +VP     +  A DP  +   + VE   D K     D DV+ +D
Sbjct: 966  PRYRHLDVPTLSFPVTQAFDPPDLKCCVDVEDDSDGKPEKDSDSDVDFED 1015


>SB_32378| Best HMM Match : DUF591 (HMM E-Value=1.6)
          Length = 457

 Score = 23.4 bits (48), Expect(2) = 6.8
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 419 DIDVEVDDTLKA 384
           D+DV++DDTL A
Sbjct: 3   DVDVDIDDTLPA 14



 Score = 23.4 bits (48), Expect(2) = 6.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 362 STANQQEIQGLDSKIHETVDTINQLKTNRE 273
           +T   QE+QG+ +   ET+D  N  ++ R+
Sbjct: 51  NTERVQELQGVVATDRETIDDPNTSESRRQ 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,653,123
Number of Sequences: 59808
Number of extensions: 271665
Number of successful extensions: 1190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)