Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P15
         (786 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.52 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.8  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 384 FGMFTNSRSL*VDLVPSFFIVLLYVCECIVILKGCLIVICNYY 256
           F +FT    L V +   +++ LL+ C  I+     L ++C YY
Sbjct: 245 FILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYY 287



 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 345 LVPSFFIVLLY--VCECIVILKGCLIVICNYY 256
           +VP FF++ +Y   C  I+     L ++C Y+
Sbjct: 137 VVPLFFLLCIYYFYCAFIIFTVHLLFLLCIYH 168


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 530  PPRLATWRPRPVRATDASKAAETRTGPSF 616
            PP + TW+ + V+ T + K  +   G  F
Sbjct: 1334 PPPVITWKIKGVQFTTSDKIRQQPDGSLF 1362


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 512 GRWGHSPPRLATWRPRPVRATDASKAAETRTG 607
           G+W +SP       P P     A  A ++R G
Sbjct: 74  GQWNYSPDNHFEQYPNPTYYNLADPARDSRKG 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,066
Number of Sequences: 336
Number of extensions: 3514
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)