Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N24
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82284-7|CAE11307.1|  343|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z70686-3|CAA94611.1|  364|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    28   9.8  

>Z82284-7|CAE11307.1|  343|Caenorhabditis elegans Hypothetical
           protein T27E7.8 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 28  PLKTFIIDTLLYMYYHKSW*TFKTQSRN*QFLLYFLELLVFHTNIIY 168
           P+K F  D  +   + K W T+  Q+    +L+  ++++ F T  +Y
Sbjct: 188 PIKEFFTDQTIVKVFGKFWETYFVQASQLIYLISIVQIVFFSTCCVY 234


>Z70686-3|CAA94611.1|  364|Caenorhabditis elegans Hypothetical
           protein R10H10.3 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 193 DLGVNSYSPRSTLHNHTKLL 252
           +LGV++Y  +S +HNH K++
Sbjct: 13  NLGVSAYKKKSLIHNHDKVI 32


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 297 NIYNLMKLFTKNTNISLHVNVQFAVMECFCSH 392
           N+Y L+ +  KNTN+ L ++  + ++E FC +
Sbjct: 64  NVY-LVTISKKNTNVILVLSALYKIVEVFCEY 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,573,882
Number of Sequences: 27780
Number of extensions: 294705
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)