Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N07
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40801| Best HMM Match : Complex1_51K (HMM E-Value=0)                73   3e-13
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)               29   3.0  
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)                29   3.0  
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)                 29   4.0  
SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_49130| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_40801| Best HMM Match : Complex1_51K (HMM E-Value=0)
          Length = 369

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 33/48 (68%), Positives = 38/48 (79%)
 Frame = -3

Query: 558 DSVDDFDXLVAAQTSLGTAAIIVMDKSTDIVKAIARLIMFYKHESCGQ 415
           D + DFD LV AQT LGTAA+IV +K  D++K IARLI FYKHESCGQ
Sbjct: 177 DVLMDFDALVQAQTGLGTAALIVFNKQADVIKGIARLIEFYKHESCGQ 224



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = -1

Query: 644 GGVXRGXENLXAIIPGGSLTPXIPKNVCETVLM 546
           GG   G +NL  +IPGGS TP IP +VC+ VLM
Sbjct: 148 GGGNGGWDNLLGVIPGGSSTPLIPLSVCDDVLM 180



 Score = 37.9 bits (84), Expect = 0.009
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = -3

Query: 252 QGLIRHFRPELERRMQEYSAAHG 184
           QGLIRH+RPE+E+RM+E++   G
Sbjct: 224 QGLIRHYRPEIEQRMKEFAEKQG 246


>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 282 ALGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSK 175
           ++G    WPV G +R+  P  ER+ QE    H  +K
Sbjct: 839 SVGRRPYWPVDGRLRNLPPLKERKRQEEKETHWTTK 874


>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
          Length = 1508

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 248  DSYVTSGPSSSDACRSTRPRTGRAKPSACTSSAIRAE 138
            D+Y T GP+  DA R+  P  G  +    T  A R E
Sbjct: 1228 DAYRTEGPTHGDAYRTEGPTRGAYRTEGPTHGAYRTE 1264


>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
          Length = 1706

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 248 DSYVTSGPSSSDACRSTRPRTGRAKPSACTSSAIRAE 138
           D+Y T GP+  DA R+  P  G  +    T  A R E
Sbjct: 625 DAYRTEGPTHGDAYRTEGPTRGAYRTEGPTHGAYRTE 661


>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
          Length = 876

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 633 PRXGKPXXHHTRRXLDPXHTQERXRD 556
           PR G P   H  R LDP   +ER RD
Sbjct: 204 PRRGDPYLDHYDRPLDPYPPRERYRD 229


>SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1356

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 281  LWATEPRGRCRDSYVTSGPSSSDAC--RSTRPRTGRA 177
            LW TE + R RD++  +G    +A   RS+R + GR+
Sbjct: 1168 LWITEHQKRLRDAHAAAGERLREAARIRSSRHQRGRS 1204


>SB_49130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 281 LWATEPRGRCRDSYVTSGPSSSDAC--RSTRPRTGRA 177
           LW TE + R RD++  +G    +A   RS+R + GR+
Sbjct: 477 LWITEHQKRLRDAHTAAGERLREAARIRSSRHQRGRS 513


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,055,689
Number of Sequences: 59808
Number of extensions: 400968
Number of successful extensions: 1169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)