Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_J23
(814 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 33 0.36
SB_36713| Best HMM Match : ResIII (HMM E-Value=1) 27 0.51
SB_7505| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.65
SB_13907| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_35915| Best HMM Match : DUF593 (HMM E-Value=0.12) 30 2.6
SB_36320| Best HMM Match : LUC7 (HMM E-Value=0.083) 29 5.9
SB_1365| Best HMM Match : Keratin_B2 (HMM E-Value=0.35) 24 7.0
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.8
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09) 28 7.8
SB_22488| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 32.7 bits (71), Expect = 0.36
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = -3
Query: 320 EEXRRQESVGFQQLERERPSVEADACSAGDRQRLTHREPRVRAESEAGRARGQLRR 153
EE +RQE Q+ E ER VEA+ D +R + R RAE E R + +++R
Sbjct: 405 EERQRQEEEKRQKEEEERLRVEAERQREED-ERQRAEDERQRAEDERQRVKHEMQR 459
>SB_36713| Best HMM Match : ResIII (HMM E-Value=1)
Length = 433
Score = 27.1 bits (57), Expect(2) = 0.51
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 104 LRLGHQRVAVELHINSDTLQATINICADS 18
LRLG + +V H+ +D Q + +C D+
Sbjct: 233 LRLGVNKHSVAAHVEADPSQDVLRVCTDA 261
Score = 23.8 bits (49), Expect(2) = 0.51
Identities = 12/37 (32%), Positives = 14/37 (37%)
Frame = -3
Query: 275 RERPSVEADACSAGDRQRLTHREPRVRAESEAGRARG 165
R RP E AC G + R P + S G G
Sbjct: 200 RHRPLTELRACRRGSSDPIQRRSPALTMISHQGLRLG 236
>SB_7505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 28.7 bits (61), Expect(2) = 0.65
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 192 CPYSWFSMSKTLPVSSTTGVSFHRWPFSFELLEPHAFLSPXLFYVHVQ 335
CP WF MS+T+ + T V H P F ++S FY+ Q
Sbjct: 446 CPAQWFYMSRTMVLHVRTMV-LHFPPNGFTFPAQWFYMSAQWFYMSAQ 492
Score = 21.8 bits (44), Expect(2) = 0.65
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 168 TCASSFRLCPYSWFSMS 218
TC + CP WF MS
Sbjct: 409 TCPHNGFTCPAQWFYMS 425
>SB_13907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Frame = -3
Query: 392 ENNKLLYKILNTEYTMYLKLD------MNVEEXRRQESVGFQQLERERPSVEADACSAGD 231
+ KLL ++L+ +T++ KLD + EE R + ++ +RER S +D S +
Sbjct: 148 QKRKLLRRVLSCIFTVFRKLDKLEKQEQDEEETRLLKKEKKKKKQRERASDSSDDVSDDE 207
Query: 230 RQRLTHREPRVRAESE 183
RQR + R + E
Sbjct: 208 RQRKRDHKRRRKHRKE 223
>SB_35915| Best HMM Match : DUF593 (HMM E-Value=0.12)
Length = 371
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -3
Query: 356 EYTMYLKLDMNVEEXRRQESVGFQQLERERPSVEADACSAGDRQRLTHREPR 201
E T LK NVEE + F+Q + E+ SVE C + R + R
Sbjct: 92 EKTRILKHLENVEEDMMRHEAAFKQFQLEKQSVERGLCGKIEEMRAENEHLR 143
>SB_36320| Best HMM Match : LUC7 (HMM E-Value=0.083)
Length = 216
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 317 EXRRQESVGFQQLERERPSVEADACSAGDRQRLTHRE-PRVRAESEAGRARGQLRR 153
E RQ+ ++ ERE+ E D +GDR R + R+ R R R+R RR
Sbjct: 104 ELERQKRREEREREREQERREMDKRRSGDRDRRSSRDADRGRRRRSRSRSRDHKRR 159
>SB_1365| Best HMM Match : Keratin_B2 (HMM E-Value=0.35)
Length = 348
Score = 24.2 bits (50), Expect(2) = 7.0
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -1
Query: 406 LSRYGRITSCC 374
L RYGR TSCC
Sbjct: 54 LRRYGRNTSCC 64
Score = 22.6 bits (46), Expect(2) = 7.0
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -1
Query: 400 RYGRITSCCIK 368
RYG TSCC++
Sbjct: 85 RYGVYTSCCVR 95
>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2735
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 547 DQFDFRREKVIDYIVVSGGPQLVRVCEHV-RFSCAQESVD 663
D+ DF+R+ +IDY + GG + + EH+ RF S+D
Sbjct: 2263 DEEDFKRDNIIDYRIDGGGEE--DIDEHIARFRDYLHSLD 2300
>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
Length = 458
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -3
Query: 356 EYTMYLKLDMN-VEEXRRQESVGFQQLERERPSVEADACSAGDRQRLTHREPRVRAESEA 180
++T + +LD++ +E ++ R S E++ACS + + L H R E +A
Sbjct: 8 DFTTHPQLDLSSTKEPESNTLTTVEESSNNRMS-ESEACSIEEHEDLVHERVEFRHEVQA 66
Query: 179 GRARGQLRRPP 147
+ +R P
Sbjct: 67 STRKVSSKRKP 77
>SB_22488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 354
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 113 SWVLRLGHQRVAVELHINSDTLQATINICADSKKKKK 3
+WV+RL H LH+ S++ ++ + C K KKK
Sbjct: 220 TWVMRLDHVEEDASLHVVSES--SSTDSCHSGKPKKK 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,302,058
Number of Sequences: 59808
Number of extensions: 516881
Number of successful extensions: 1653
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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