Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_J19
(773 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 205 2e-53
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 141 4e-34
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 141 4e-34
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 133 1e-31
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 128 3e-30
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 126 1e-29
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 126 1e-29
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 125 4e-29
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 125 4e-29
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 123 2e-28
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 121 6e-28
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 95 5e-20
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 95 5e-20
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 87 9e-18
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 85 5e-17
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 84 9e-17
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 84 1e-16
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 83 2e-16
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 83 2e-16
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 83 3e-16
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 81 8e-16
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 81 1e-15
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 79 4e-15
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 78 6e-15
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 77 2e-14
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 76 3e-14
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 75 7e-14
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 74 9e-14
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 73 2e-13
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 73 2e-13
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 73 3e-13
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 72 5e-13
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 69 3e-12
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 69 3e-12
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 66 3e-11
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 66 3e-11
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 65 6e-11
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 63 2e-10
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 63 2e-10
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 62 4e-10
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 62 5e-10
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 61 7e-10
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 61 7e-10
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 60 1e-09
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 60 1e-09
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 60 1e-09
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 58 5e-09
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 58 6e-09
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 56 3e-08
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 52 3e-07
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 52 4e-07
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 52 6e-07
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 52 6e-07
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 51 1e-06
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 51 1e-06
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 39 0.003
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 34 0.091
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 33 0.16
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 31 0.85
At3g07540.1 68416.m00900 formin homology 2 domain-containing pro... 30 2.0
At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containi... 29 2.6
At1g51850.1 68414.m05845 leucine-rich repeat protein kinase, put... 29 2.6
At1g51820.1 68414.m05841 leucine-rich repeat protein kinase, put... 29 2.6
At1g64850.1 68414.m07352 calcium-binding EF hand family protein ... 29 4.5
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 205 bits (501), Expect = 2e-53
Identities = 119/218 (54%), Positives = 136/218 (62%), Gaps = 6/218 (2%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTMLAKAVA+H TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN+P
Sbjct: 198 PGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEV 257
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWPS 367
AT RFDAQTGADREVQRIL+ELLNQMDGFDQT NVKVIMATNRADTLDP + + P
Sbjct: 258 DAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR--PG 315
Query: 366 RQKNRVS----TSR*ASKTFDFLDN--HYQDEPXXXXXXXXXXXXXGPRVRRRHQRHLSG 205
R ++ R F + + DE + Q
Sbjct: 316 RLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQ---EA 372
Query: 204 GRHARCXGKTDILSFXKDFEKGYKNNIKKDESEYEFYK 91
G HA K + KDFEKGY+ N+KK ++++EFYK
Sbjct: 373 GMHA--VRKNRYVILPKDFEKGYRANVKKPDTDFEFYK 408
Score = 125 bits (302), Expect = 3e-29
Identities = 56/70 (80%), Positives = 65/70 (92%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PALLRPGRLDRKIEFPLPDRRQKRL+F T+KMNLSDEVDLE++V+RPD++S A+I AI
Sbjct: 309 PALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAI 368
Query: 212 CQEAGMHAVQ 183
CQEAGMHAV+
Sbjct: 369 CQEAGMHAVR 378
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
QIGI+PPRGVL+YGPP
Sbjct: 183 QIGIDPPRGVLLYGPP 198
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 141 bits (342), Expect = 4e-34
Identities = 64/116 (55%), Positives = 88/116 (75%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKAVA+ +A F+RVVGSE +QKYLG+GP++VR++FR+A + SP
Sbjct: 231 PGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEI 290
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
TKR+DA +G +RE+QR +LELLNQ+DGFD +VKVI+ATNR ++LDP + +
Sbjct: 291 DAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLR 346
Score = 96.7 bits (230), Expect = 2e-20
Identities = 47/92 (51%), Positives = 63/92 (68%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PALLRPGR+DRKIEFPLPD + +R IF T+KM LS++V+LEEFV D SGADI AI
Sbjct: 342 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAI 401
Query: 212 CQEAGMHAVQGKQIYCPSLKISKRVTRITSRK 117
C EAG+ A++ +++ K ++ +K
Sbjct: 402 CTEAGLLALRERRMKVTHPDFKKAKEKVMFKK 433
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -2
Query: 769 IGIEPPRGVLMYGPP 725
IGI+PP+GV++YG P
Sbjct: 217 IGIKPPKGVILYGEP 231
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 141 bits (342), Expect = 4e-34
Identities = 64/116 (55%), Positives = 88/116 (75%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKAVA+ +A F+RVVGSE +QKYLG+GP++VR++FR+A + SP
Sbjct: 231 PGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEI 290
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
TKR+DA +G +RE+QR +LELLNQ+DGFD +VKVI+ATNR ++LDP + +
Sbjct: 291 DAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLR 346
Score = 97.1 bits (231), Expect = 1e-20
Identities = 46/92 (50%), Positives = 64/92 (69%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PALLRPGR+DRKIEFPLPD + +R IF T+KM L+++V+LEEFV D SGADI AI
Sbjct: 342 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAI 401
Query: 212 CQEAGMHAVQGKQIYCPSLKISKRVTRITSRK 117
C EAG+ A++ +++ + K ++ +K
Sbjct: 402 CTEAGLLALRERRMKVTHVDFKKAKEKVMFKK 433
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -2
Query: 769 IGIEPPRGVLMYGPP 725
IGI+PP+GV++YG P
Sbjct: 217 IGIKPPKGVILYGEP 231
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 133 bits (322), Expect = 1e-31
Identities = 65/130 (50%), Positives = 84/130 (64%)
Frame = -3
Query: 738 CMDHPGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXX 559
C PG GKT+LA+AVA+ A FIRV+GSE VQKY+GEG RMVR++F++A+
Sbjct: 207 CYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVF 266
Query: 558 XXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
RFD G D EVQR +LE++NQ+DGFD N+KV+MATNR DTLDP + +
Sbjct: 267 FDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLR 326
Query: 378 TWPSRQKNRV 349
P R +V
Sbjct: 327 --PGRLDRKV 334
Score = 71.3 bits (167), Expect = 6e-13
Identities = 33/73 (45%), Positives = 45/73 (61%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PALLRPGRLDRK+EF LPD + IF T MN ++ E +GADI ++
Sbjct: 322 PALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSV 381
Query: 212 CQEAGMHAVQGKQ 174
C EAGM+A++ ++
Sbjct: 382 CTEAGMYAIRARR 394
Score = 32.7 bits (71), Expect = 0.28
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
++GI+PP+GVL YGPP
Sbjct: 196 KLGIDPPKGVLCYGPP 211
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 128 bits (310), Expect = 3e-30
Identities = 64/130 (49%), Positives = 83/130 (63%)
Frame = -3
Query: 738 CMDHPGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXX 559
C PG GKT++A+AVA+ A FIRVVGSE VQKY+GEG RMVR++F++A+
Sbjct: 244 CYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILF 303
Query: 558 XXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
RFD G+D EVQR +LE+L Q+DGFD N+KV+MATNR D LDP + +
Sbjct: 304 FDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLR 363
Query: 378 TWPSRQKNRV 349
P R +V
Sbjct: 364 --PGRLDRKV 371
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/73 (43%), Positives = 44/73 (60%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PALLRPGRLDRK+EF LPD + IF T M+ ++ E +GADI ++
Sbjct: 359 PALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSV 418
Query: 212 CQEAGMHAVQGKQ 174
C EAGM+A+ ++
Sbjct: 419 CIEAGMYAIGARR 431
Score = 32.7 bits (71), Expect = 0.28
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
++GI+PP+GVL YGPP
Sbjct: 233 RLGIDPPKGVLCYGPP 248
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 126 bits (305), Expect = 1e-29
Identities = 66/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LA+AVAHH FIRV GSE VQKY+GEG RMVR++F +A+E++P
Sbjct: 204 PGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEI 263
Query: 546 XXXATKRFDAQTG-ADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWP 370
+ R ++ +G D EVQR +LELLNQ+DGF+ + +KV+MATNR D LD + + P
Sbjct: 264 DSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLR--P 321
Query: 369 SRQKNRVSTSR*ASKT-FDFLDNH 301
R ++ ++ FD L H
Sbjct: 322 GRIDRKIEFPNPNEESRFDILKIH 345
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/97 (36%), Positives = 57/97 (58%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
ALLRPGR+DRKIEFP P+ + I + KMNL +DL++ + + SGA++ A+C
Sbjct: 317 ALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVC 376
Query: 209 QEAGMHAVQGKQIYCPSLKISKRVTRITSRKMRANMN 99
EAGM A++ ++++ V ++ + NM+
Sbjct: 377 TEAGMFALRERRVHVTQEDFEMAVAKVMKKDTEKNMS 413
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 769 IGIEPPRGVLMYGPP 725
+GI P+GVL+YGPP
Sbjct: 190 LGIAQPKGVLLYGPP 204
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 126 bits (305), Expect = 1e-29
Identities = 66/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LA+AVAHH FIRV GSE VQKY+GEG RMVR++F +A+E++P
Sbjct: 204 PGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEI 263
Query: 546 XXXATKRFDAQTG-ADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWP 370
+ R ++ +G D EVQR +LELLNQ+DGF+ + +KV+MATNR D LD + + P
Sbjct: 264 DSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLR--P 321
Query: 369 SRQKNRVSTSR*ASKT-FDFLDNH 301
R ++ ++ FD L H
Sbjct: 322 GRIDRKIEFPNPNEESRFDILKIH 345
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/97 (36%), Positives = 57/97 (58%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
ALLRPGR+DRKIEFP P+ + I + KMNL +DL++ + + SGA++ A+C
Sbjct: 317 ALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVC 376
Query: 209 QEAGMHAVQGKQIYCPSLKISKRVTRITSRKMRANMN 99
EAGM A++ ++++ V ++ + NM+
Sbjct: 377 TEAGMFALRERRVHVTQEDFEMAVAKVMKKDTEKNMS 413
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 769 IGIEPPRGVLMYGPP 725
+GI P+GVL+YGPP
Sbjct: 190 LGIAQPKGVLLYGPP 204
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 125 bits (301), Expect = 4e-29
Identities = 56/117 (47%), Positives = 78/117 (66%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT++A+A A A F+++ G + VQ ++G+G ++VRD F+LAKE +P
Sbjct: 214 PGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEI 273
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKT 376
TKRFD++ DREVQR +LELLNQ+DGF +KVI ATNRAD LDP + ++
Sbjct: 274 DAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRS 330
Score = 69.3 bits (162), Expect = 3e-12
Identities = 35/99 (35%), Positives = 57/99 (57%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PAL+R GRLDRKIEFP P + I + KMN+ +V+ EE D +GA + A+
Sbjct: 325 PALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAV 384
Query: 212 CQEAGMHAVQGKQIYCPSLKISKRVTRITSRKMRANMNF 96
C EAGM A++ ++ + ++ ++K +A++N+
Sbjct: 385 CVEAGMLALRRDATEVNHEDFNEGIIQVQAKK-KASLNY 422
Score = 32.7 bits (71), Expect = 0.28
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
++G+ PP+GVL+YGPP
Sbjct: 199 KLGVRPPKGVLLYGPP 214
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 125 bits (301), Expect = 4e-29
Identities = 57/117 (48%), Positives = 77/117 (65%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT++A+A A A F+++ G + VQ ++G+G ++VRD F LAKE SP
Sbjct: 213 PGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEI 272
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKT 376
TKRFD++ DREVQR +LELLNQ+DGF +KVI ATNRAD LDP + ++
Sbjct: 273 DAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRS 329
Score = 69.3 bits (162), Expect = 3e-12
Identities = 35/99 (35%), Positives = 58/99 (58%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PAL+R GRLDRKIEFP P + I + KMN++ +V+ EE D +GA + A+
Sbjct: 324 PALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAV 383
Query: 212 CQEAGMHAVQGKQIYCPSLKISKRVTRITSRKMRANMNF 96
C EAGM A++ ++ + ++ ++K +A++N+
Sbjct: 384 CVEAGMLALRRDATEVNHEDFNEGIIQVQAKK-KASLNY 421
Score = 33.1 bits (72), Expect = 0.21
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
++GI PP+GVL+YGPP
Sbjct: 198 KLGIRPPKGVLLYGPP 213
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 123 bits (296), Expect = 2e-28
Identities = 58/126 (46%), Positives = 81/126 (64%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LA+A+A + A F++VV S + KY+GE R++R++F A+E+ P
Sbjct: 182 PGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEI 241
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWPS 367
+RF T ADRE+QR L+ELLNQ+DGFDQ VK+IMATNR D LDP + + P
Sbjct: 242 DAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLR--PG 299
Query: 366 RQKNRV 349
R ++
Sbjct: 300 RLDRKI 305
Score = 71.3 bits (167), Expect = 6e-13
Identities = 37/101 (36%), Positives = 55/101 (54%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PALLRPGRLDRKIE PLP+ + + I + + E+D E V + +GAD+ I
Sbjct: 293 PALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNI 352
Query: 212 CQEAGMHAVQGKQIYCPSLKISKRVTRITSRKMRANMNFIN 90
C EAGM A++ ++ Y K V +++ K + + N
Sbjct: 353 CTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESSSHYN 393
Score = 33.9 bits (74), Expect = 0.12
Identities = 11/16 (68%), Positives = 16/16 (100%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
++GI+PP+GVL+YGPP
Sbjct: 167 RVGIKPPKGVLLYGPP 182
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 121 bits (291), Expect = 6e-28
Identities = 57/126 (45%), Positives = 80/126 (63%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LA+A+A + A F++VV S + KY+GE R++R++F A+E+ P
Sbjct: 182 PGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEI 241
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWPS 367
+RF T ADRE+QR L+ELLNQ+DGFD VK+IMATNR D LDP + + P
Sbjct: 242 DAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVKMIMATNRPDVLDPALLR--PG 299
Query: 366 RQKNRV 349
R ++
Sbjct: 300 RLDRKI 305
Score = 70.9 bits (166), Expect = 9e-13
Identities = 37/101 (36%), Positives = 54/101 (53%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PALLRPGRLDRKIE PLP+ + + I + E+D E V + +GAD+ I
Sbjct: 293 PALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNI 352
Query: 212 CQEAGMHAVQGKQIYCPSLKISKRVTRITSRKMRANMNFIN 90
C EAGM A++ ++ Y K V +++ K + + N
Sbjct: 353 CTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESSSHYN 393
Score = 33.9 bits (74), Expect = 0.12
Identities = 11/16 (68%), Positives = 16/16 (100%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
++GI+PP+GVL+YGPP
Sbjct: 167 RVGIKPPKGVLLYGPP 182
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 95.1 bits (226), Expect = 5e-20
Identities = 52/127 (40%), Positives = 72/127 (56%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKA+A F + GSEFV+ ++G G VRD+F+ AKEN+P
Sbjct: 269 PGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEI 328
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWPS 367
+R G + E ++ L +LL +MDGF+ T V V+ ATNRAD LD + + P
Sbjct: 329 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLR--PG 386
Query: 366 RQKNRVS 346
R +VS
Sbjct: 387 RFDRQVS 393
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/89 (30%), Positives = 42/89 (47%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
ALLRPGR DR++ +PD + + I ++V LE R SGAD+ +
Sbjct: 381 ALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSGADLANLL 440
Query: 209 QEAGMHAVQGKQIYCPSLKISKRVTRITS 123
EA + A + + S +I + RI +
Sbjct: 441 NEAAILAGRRARTSISSKEIDDSIDRIVA 469
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 95.1 bits (226), Expect = 5e-20
Identities = 52/127 (40%), Positives = 72/127 (56%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKA+A F + GSEFV+ ++G G VRD+F+ AKEN+P
Sbjct: 262 PGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEI 321
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWPS 367
+R G + E ++ L +LL +MDGF+ T V V+ ATNRAD LD + + P
Sbjct: 322 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLR--PG 379
Query: 366 RQKNRVS 346
R +VS
Sbjct: 380 RFDRQVS 386
Score = 44.4 bits (100), Expect = 9e-05
Identities = 27/89 (30%), Positives = 41/89 (46%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
ALLRPGR DR++ +PD + + I + V LE R SGAD+ +
Sbjct: 374 ALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMRTPGFSGADLANLL 433
Query: 209 QEAGMHAVQGKQIYCPSLKISKRVTRITS 123
EA + A + + S +I + RI +
Sbjct: 434 NEAAILAGRRGKTAISSKEIDDSIDRIVA 462
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 87.4 bits (207), Expect = 9e-18
Identities = 50/117 (42%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKAVA FI SEFV+ Y+G G VRD+F AK+ +P
Sbjct: 367 PGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEI 426
Query: 546 XXXATKRFDA-QTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
A R + G++ E ++ L +LL +MDGFD + V V+ ATNRAD LDP + +
Sbjct: 427 DAVAKSRDGKFRMGSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRADVLDPALRR 483
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTK--MNLSDEVDLEEFVARPDRVSGADIN 219
PAL RPGR DR + PD+ + I +K + L D+V+L + +GAD+
Sbjct: 479 PALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASMTTGFTGADLA 538
Query: 218 AICQEAGMHA 189
+ EA + A
Sbjct: 539 NLVNEAALLA 548
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 85.0 bits (201), Expect = 5e-17
Identities = 43/116 (37%), Positives = 66/116 (56%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PGCGKT+LAKA+A+ A FI + G E + + GE VR++F A++++P
Sbjct: 524 PGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDEL 583
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
AT+R ++ A R+L +LL +MDG + V +I ATNR D +DP + +
Sbjct: 584 DSIATQRGNSVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLR 639
Score = 66.9 bits (156), Expect = 1e-11
Identities = 41/116 (35%), Positives = 63/116 (54%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT++A+AVA+ A F + G E + K GE +R F A++N+P
Sbjct: 251 PGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEI 310
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
A KR +T + E +RI+ +LL MDG +V V+ ATNR +++DP + +
Sbjct: 311 DSIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRR 363
Score = 61.3 bits (142), Expect = 7e-10
Identities = 30/70 (42%), Positives = 40/70 (57%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PALLRPGRLD+ I PLPD + IF + K ++ +VDL SGADI I
Sbjct: 635 PALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGADITEI 694
Query: 212 CQEAGMHAVQ 183
CQ + +A++
Sbjct: 695 CQRSCKYAIR 704
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PAL R GR DR+I+ +PD + + T M L+++VDLE GAD+ A+
Sbjct: 359 PALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVGADLAAL 418
Query: 212 CQEAGMHAVQGK 177
C EA + ++ K
Sbjct: 419 CTEAALQCIREK 430
Score = 33.1 bits (72), Expect = 0.21
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = -2
Query: 769 IGIEPPRGVLMYGPP 725
IG++PP+G+L+YGPP
Sbjct: 237 IGVKPPKGILLYGPP 251
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 84.2 bits (199), Expect = 9e-17
Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKAVA FI SEFV+ Y+G G VRD+F AK+ +P
Sbjct: 371 PGTGKTLLAKAVAGESDVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEI 430
Query: 546 XXXATKRFDA-QTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
A R + ++ E ++ L +LL +MDGFD ++ V V+ ATNRAD LDP + +
Sbjct: 431 DAVAKSRDGKFRMVSNDEREQTLNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRR 487
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTK--MNLSDEVDLEEFVARPDRVSGADIN 219
PAL RPGR DR + PD+ + I +K + L D+V+L + +GAD+
Sbjct: 483 PALRRPGRFDRVVTVESPDKVGRESILKVHVSKKELPLGDDVNLASIASMTTGFTGADLA 542
Query: 218 AICQEAGMHA 189
+ EA + A
Sbjct: 543 NLVNEAALLA 552
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 83.8 bits (198), Expect = 1e-16
Identities = 48/127 (37%), Positives = 66/127 (51%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKA+A F + GSEF++ ++G G RD+F AK NSP
Sbjct: 265 PGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRARDLFNKAKANSPCIVFIDEI 324
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWPS 367
R G + E ++ L ++L +MDGF T V VI ATNR + LD + + P
Sbjct: 325 DAVGRMRGTGIGGGNDEREQTLNQILTEMDGFAGNTGVIVIAATNRPEILDSALLR--PG 382
Query: 366 RQKNRVS 346
R +VS
Sbjct: 383 RFDRQVS 389
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/67 (37%), Positives = 33/67 (49%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
ALLRPGR DR++ LPD R + I + L +V L R SGAD+ +
Sbjct: 377 ALLRPGRFDRQVSVGLPDIRGREEILKVHSRSKKLDKDVSLSVIAMRTPGFSGADLANLM 436
Query: 209 QEAGMHA 189
EA + A
Sbjct: 437 NEAAILA 443
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 83.4 bits (197), Expect = 2e-16
Identities = 47/136 (34%), Positives = 68/136 (50%)
Frame = -3
Query: 744 CSCMDHPGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXX 565
C + PG GKT+LA+AVA F SEFV+ ++G G VRD+F AK +P
Sbjct: 286 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCI 345
Query: 564 XXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCV 385
+R G + E ++ + +LL +MDGF + V V+ ATNR D LD +
Sbjct: 346 VFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSAL 405
Query: 384 AKTWPSRQKNRVSTSR 337
+ P R +V+ R
Sbjct: 406 LR--PGRFDRQVTVDR 419
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/95 (28%), Positives = 44/95 (46%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
ALLRPGR DR++ PD + I + + +VD E+ R +GAD+ +
Sbjct: 404 ALLRPGRFDRQVTVDRPDVAGRVQILKVHSRGKAIGKDVDYEKVARRTPGFTGADLQNLM 463
Query: 209 QEAGMHAVQGKQIYCPSLKISKRVTRITSRKMRAN 105
EA + A + + +IS + RI + + N
Sbjct: 464 NEAAILAARRELKEISKDEISDALERIIAGPEKKN 498
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 83.4 bits (197), Expect = 2e-16
Identities = 47/136 (34%), Positives = 68/136 (50%)
Frame = -3
Query: 744 CSCMDHPGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXX 565
C + PG GKT+LA+AVA F SEFV+ ++G G VRD+F AK +P
Sbjct: 298 CLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCI 357
Query: 564 XXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCV 385
+R G + E ++ + +LL +MDGF + V V+ ATNR D LD +
Sbjct: 358 VFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSAL 417
Query: 384 AKTWPSRQKNRVSTSR 337
+ P R +V+ R
Sbjct: 418 LR--PGRFDRQVTVDR 431
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/95 (28%), Positives = 44/95 (46%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
ALLRPGR DR++ PD + I + L +VD ++ R +GAD+ +
Sbjct: 416 ALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTGADLQNLM 475
Query: 209 QEAGMHAVQGKQIYCPSLKISKRVTRITSRKMRAN 105
EA + A + + +IS + RI + + N
Sbjct: 476 NEAAILAARRELKEISKDEISDALERIIAGPEKKN 510
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 82.6 bits (195), Expect = 3e-16
Identities = 43/116 (37%), Positives = 65/116 (56%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PGCGKT+LAKA+A+ A FI V G E + + GE VR++F A++++P
Sbjct: 523 PGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDEL 582
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
AT+R ++ A R+L +LL +MDG + V +I ATNR D +D + +
Sbjct: 583 DSIATQRGNSAGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLR 638
Score = 67.7 bits (158), Expect = 8e-12
Identities = 41/116 (35%), Positives = 63/116 (54%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT++A+AVA+ A F + G E + K GE +R F A++N+P
Sbjct: 250 PGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEI 309
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
A KR +T + E +RI+ +LL MDG +V V+ ATNR +++DP + +
Sbjct: 310 DSIAPKR--EKTNGEVE-RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRR 362
Score = 56.4 bits (130), Expect = 2e-08
Identities = 29/69 (42%), Positives = 38/69 (55%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
ALLRPGRLD+ I PLPD + IF K ++ +VD+ SGADI IC
Sbjct: 635 ALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSGADITEIC 694
Query: 209 QEAGMHAVQ 183
Q A +A++
Sbjct: 695 QRACKYAIR 703
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PAL R GR DR+I+ +PD + + T M L+++VDLE GAD+ A+
Sbjct: 358 PALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAAL 417
Query: 212 CQEAGMHAVQGK 177
C EA + ++ K
Sbjct: 418 CTEAALQCIREK 429
Score = 33.1 bits (72), Expect = 0.21
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = -2
Query: 769 IGIEPPRGVLMYGPP 725
IG++PP+G+L+YGPP
Sbjct: 236 IGVKPPKGILLYGPP 250
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 81.0 bits (191), Expect = 8e-16
Identities = 48/126 (38%), Positives = 66/126 (52%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LA+AVA F V SEFV+ ++G G +RD+F A++NSP
Sbjct: 376 PGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARIRDLFNAARKNSPSIIFIDEL 435
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWPS 367
KR + E + L +LL +MDGF+ T V VI ATNR + LD + + P
Sbjct: 436 DAVGGKR---GRSFNDERDQTLNQLLTEMDGFESDTKVIVIAATNRPEALDSALCR--PG 490
Query: 366 RQKNRV 349
R +V
Sbjct: 491 RFSRKV 496
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLE-EFVA--RPDRVSGADIN 219
AL RPGR RK+ PD+ +R I + + L ++ L + VA P V GAD+
Sbjct: 485 ALCRPGRFSRKVLVAEPDQEGRRKILAIHLRDVPLEEDAFLICDLVASLTPGFV-GADLA 543
Query: 218 AICQEAGMHAVQ 183
I EA + A +
Sbjct: 544 NIVNEAALLAAR 555
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 80.6 bits (190), Expect = 1e-15
Identities = 54/150 (36%), Positives = 75/150 (50%), Gaps = 8/150 (5%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PGCGKT++AKA+A F ++ GSEFV+ +G G +RD+F+ AK N P
Sbjct: 472 PGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEI 531
Query: 546 XXXATKR---FDAQT-----GADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 391
AT+R F + A +E + L +LL ++DGFD V + ATNR D LDP
Sbjct: 532 DALATRRQGIFKENSDQLYNAATQERETTLNQLLIELDGFDTGKGVIFLGATNRRDLLDP 591
Query: 390 CVAKTWPSRQKNRVSTSR*ASKTFDFLDNH 301
+ + +K RV A D L H
Sbjct: 592 ALLRPGRFDRKIRVRPPN-AKGRLDILKIH 620
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/70 (40%), Positives = 40/70 (57%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PALLRPGR DRKI P+ + + I +K+ +SD VDL + + SGA + +
Sbjct: 591 PALLRPGRFDRKIRVRPPNAKGRLDILKIHASKVKMSDSVDLSSYASNLPGWSGAKLAQL 650
Query: 212 CQEAGMHAVQ 183
QEA + AV+
Sbjct: 651 VQEAALVAVR 660
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
++GI+PP GVL+ GPP
Sbjct: 457 KMGIKPPHGVLLEGPP 472
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 78.6 bits (185), Expect = 4e-15
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PGCGKT+LAKA+A+ A FI V G E + + GE VR++F A++++P
Sbjct: 523 PGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDEL 582
Query: 546 XXXATKRFDAQTG-ADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
AT+R G R+L +LL +MDG + V +I ATNR D +D + +
Sbjct: 583 DSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLR 639
Score = 67.7 bits (158), Expect = 8e-12
Identities = 41/116 (35%), Positives = 63/116 (54%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT++A+AVA+ A F + G E + K GE +R F A++N+P
Sbjct: 250 PGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEI 309
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
A KR +T + E +RI+ +LL MDG +V V+ ATNR +++DP + +
Sbjct: 310 DSIAPKR--EKTNGEVE-RRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRR 362
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/69 (42%), Positives = 38/69 (55%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
ALLRPGRLD+ I PLPD + IF K ++ +VD+ SGADI IC
Sbjct: 636 ALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSGADITEIC 695
Query: 209 QEAGMHAVQ 183
Q A +A++
Sbjct: 696 QRACKYAIR 704
Score = 51.6 bits (118), Expect = 6e-07
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PAL R GR DR+I+ +PD + + T M L+++VDLE GAD+ A+
Sbjct: 358 PALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAAL 417
Query: 212 CQEAGMHAVQGK 177
C EA + ++ K
Sbjct: 418 CTEAALQCIREK 429
Score = 33.1 bits (72), Expect = 0.21
Identities = 10/15 (66%), Positives = 15/15 (100%)
Frame = -2
Query: 769 IGIEPPRGVLMYGPP 725
IG++PP+G+L+YGPP
Sbjct: 236 IGVKPPKGILLYGPP 250
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 78.2 bits (184), Expect = 6e-15
Identities = 43/130 (33%), Positives = 67/130 (51%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKA A F+ + GS+F++ ++G GP VR +F+ A++ +P
Sbjct: 364 PGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRHLFQEARQAAPSIIFIDEI 423
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWPS 367
R G + E + L +LL +MDGF T V V+ TNR D LD + + P
Sbjct: 424 DAIGRARGRGGLGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLR--PG 481
Query: 366 RQKNRVSTSR 337
R +++ +
Sbjct: 482 RFDRQITIDK 491
Score = 44.4 bits (100), Expect = 9e-05
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDL--EEFVARPDRVSGADINA 216
ALLRPGR DR+I PD + + IF K+ L E + A +GADI
Sbjct: 476 ALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLDHEPSYYSQRLAALTPGFAGADIAN 535
Query: 215 ICQEAGMHAVQ 183
+C EA + A +
Sbjct: 536 VCNEAALIAAR 546
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 76.6 bits (180), Expect = 2e-14
Identities = 43/116 (37%), Positives = 60/116 (51%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT LA+ A H F V G E + +YLGE + + +VFR A +P
Sbjct: 427 PGTGKTSLARTFARHSGVNFFSVNGPEIISQYLGESEKALDEVFRSASNATPAVVFIDDL 486
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
A R + G + QR++ LLN MDG +T V VI ATNR D+++P + +
Sbjct: 487 DAIAPAR---KEGGEELSQRMVATLLNLMDGISRTDGVVVIAATNRPDSIEPALRR 539
Score = 72.9 bits (171), Expect = 2e-13
Identities = 40/116 (34%), Positives = 59/116 (50%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PGC KT++A+AVA F+ V G E K++GE + VR +F A+ N+P
Sbjct: 767 PGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEI 826
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
A+ R G R++ +LL ++DG Q V VI ATNR D +D + +
Sbjct: 827 DSLASIRGKENDGVSVS-DRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDSALLR 881
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLS-DEVDLEEFVARPDRVSGADINA 216
PAL RPGRLDR+IE +P Q+ I I M S + +E+ GAD++A
Sbjct: 535 PALRRPGRLDREIEIGVPSSTQRSDILHIILRGMRHSLSNIQVEQLAMATHGFVGADLSA 594
Query: 215 ICQEA 201
+C EA
Sbjct: 595 LCCEA 599
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
ALLRPGR DR + P+ + I K+ S ++ L+E + +GADI+ IC
Sbjct: 878 ALLRPGRFDRLLYVGPPNETDREAILKIHLRKIPCSSDICLKELASITKGYTGADISLIC 937
Query: 209 QEAGMHAVQ 183
+EA + A++
Sbjct: 938 REAAIAALE 946
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
+IG PP G+LM+GPP
Sbjct: 752 RIGTRPPSGILMFGPP 767
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 75.8 bits (178), Expect = 3e-14
Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKA A F+ + GS+F++ ++G GP VR++F+ A++ +P
Sbjct: 369 PGTGKTLLAKATAGESAVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEI 428
Query: 546 XXXATKR-FDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWP 370
R +G + E + L +LL +MDGF T V V+ TNR D LD + + P
Sbjct: 429 DAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLR--P 486
Query: 369 SRQKNRVSTSR 337
R +++ +
Sbjct: 487 GRFDRQITIDK 497
Score = 44.4 bits (100), Expect = 9e-05
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDL--EEFVARPDRVSGADINA 216
ALLRPGR DR+I PD + + IF K+ L E + A +GADI
Sbjct: 482 ALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIAN 541
Query: 215 ICQEAGMHAVQ 183
+C EA + A +
Sbjct: 542 VCNEAALIAAR 552
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 74.5 bits (175), Expect = 7e-14
Identities = 43/112 (38%), Positives = 64/112 (57%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PGCGKT++AKA A+ A F+ + G+E + KY+GE +R +F+ A+ +P
Sbjct: 571 PGCGKTLIAKAAANEAGANFMHIKGAELLNKYVGESELAIRTLFQRARTCAPCVIFFDEV 630
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 391
T R + GA V+R+L + L ++DG + NV VI ATNR D +DP
Sbjct: 631 DALTTSR--GKEGA-WVVERLLNQFLVELDG-GERRNVYVIGATNRPDVVDP 678
Score = 54.8 bits (126), Expect = 6e-08
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PGCGKT LA A+A+ F ++ +E + G +R++F A +P
Sbjct: 276 PGCGKTKLANAIANEAGVPFYKISATEVISGVSGASEENIRELFSKAYRTAPSIVFIDEI 335
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDG---------FDQTTN-VKVIMATNRADTL 397
+KR + Q ++ RI+ +LL MDG D + V VI ATNR D L
Sbjct: 336 DAIGSKRENQQREMEK---RIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDAL 392
Query: 396 DPCVAKT 376
DP + ++
Sbjct: 393 DPALRRS 399
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARP-DRVSGADINA 216
PA LRPGR + PLP+ ++ I I K + VDL+ + SGAD+
Sbjct: 678 PAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAKNNCEGFSGADLAH 737
Query: 215 ICQEAGMHAVQ 183
+ Q+A AV+
Sbjct: 738 LVQKATFQAVE 748
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PAL R GR + +I PD + I S + K+ L D + GAD+ ++
Sbjct: 394 PALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIARLTPGFVGADLESV 453
Query: 212 CQEAGMHAVQ 183
AG A++
Sbjct: 454 AYLAGRKAIK 463
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
+IG++PP G+L +GPP
Sbjct: 261 KIGVKPPSGILFHGPP 276
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 74.1 bits (174), Expect = 9e-14
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKA+A F G++FV+ ++G V+D+F ++ +P
Sbjct: 358 PGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFASSRSYAPSIIFIDEI 417
Query: 546 XXXATKRFDAQT-GADREVQRILLELLNQMDGFDQTTN-VKVIMATNRADTLDPCVAK 379
+KR G E ++ LL++L +MDGF TT+ V VI ATNR D LDP + +
Sbjct: 418 DAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVTTSQVLVIGATNRLDILDPALLR 475
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 73.3 bits (172), Expect = 2e-13
Identities = 41/116 (35%), Positives = 61/116 (52%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKA+A F GSEF + ++G G R VR +F+ AK+ +P
Sbjct: 404 PGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEI 463
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
+ R + ++ L +LL +MDGF+Q + V+ ATN D LDP + +
Sbjct: 464 DAVGSTR----KQWEGHTKKTLHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTR 515
Score = 45.2 bits (102), Expect = 5e-05
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADI-NA 216
PAL RPGR DR I P PD R + I +S++VD++ +GAD+ N
Sbjct: 511 PALTRPGRFDRHIVVPSPDVRGREEILELYLQGKPMSEDVDVKAIARGTPGFNGADLANL 570
Query: 215 ICQEAGMHAVQG-KQIYCPSLKISK-RVTRITSRK 117
+ A AV+G +++ L+ +K R+ T RK
Sbjct: 571 VNIAAIKAAVEGAEKLSSEQLEFAKDRIVMGTERK 605
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 73.3 bits (172), Expect = 2e-13
Identities = 41/116 (35%), Positives = 60/116 (51%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKAVA F + S+FV+ Y+G G VR +++ A+EN+P
Sbjct: 452 PGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALYQEARENAPSVVFIDEL 511
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
+R + +E L +LL +DGF+ V I +TNR D LDP + +
Sbjct: 512 DAVGRERGLIKGSGGQERDATLNQLLVSLDGFEGRGEVITIASTNRPDILDPALVR 567
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PAL+RPGR DRKI P P + I K +++++D + D + GA++ I
Sbjct: 563 PALVRPGRFDRKIFIPKPGLIGRMEILQVHARKKPMAEDLDYMAVASMTDGMVGAELANI 622
Query: 212 CQEAGMHAVQ 183
+ A ++ ++
Sbjct: 623 VEIAAINMMR 632
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 72.5 bits (170), Expect = 3e-13
Identities = 45/131 (34%), Positives = 61/131 (46%)
Frame = -3
Query: 771 KSVLSLLGXCSCMDHPGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFR 592
KS L L PGCGKT + A A + FI V G E + KY+G + VRD+F
Sbjct: 872 KSPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFS 931
Query: 591 LAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATN 412
A +P A KR TG R++ + L ++DG + T V V AT+
Sbjct: 932 KAAAAAPCILFFDEFDSIAPKRGHDNTGV---TDRVVNQFLTELDGVEVLTGVFVFAATS 988
Query: 411 RADTLDPCVAK 379
R D LDP + +
Sbjct: 989 RPDLLDPALLR 999
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Frame = -1
Query: 392 PALLRPGRLDRKI--EFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADIN 219
PALLRPGRLDR + +FP P R + I + ++ K+ ++D++DLE + SGAD+
Sbjct: 995 PALLRPGRLDRLLLCDFPSPPERLE--ILTVLSRKLLMADDIDLEPIALMTEGFSGADLQ 1052
Query: 218 AICQEAGMHAV 186
A+ +A + AV
Sbjct: 1053 ALLSDAQLAAV 1063
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 71.7 bits (168), Expect = 5e-13
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PGC KT LAKA A+ A+F + +E Y+GEG ++R+ F+ A+ SP
Sbjct: 329 PGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEA 388
Query: 546 XXXATKRFDAQTGADREV-QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
A KR D + V +R+L LL +MDG ++ + V+ ATNR +D + +
Sbjct: 389 DVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMR 445
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/64 (37%), Positives = 35/64 (54%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
AL+RPGR D + P PD + I T M L D+VDL + D +GA++ +C
Sbjct: 442 ALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLRKIAEETDLFTGAELEGLC 501
Query: 209 QEAG 198
+E+G
Sbjct: 502 RESG 505
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/68 (36%), Positives = 35/68 (51%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
PAL R GR D +E P+ + I T K+NL VDL+ + GAD+ A+
Sbjct: 179 PALRRAGRFDALVEVSTPNEEDRLKILQLYTKKVNLDPSVDLQAIAISCNGYVGADLEAL 238
Query: 212 CQEAGMHA 189
C+EA + A
Sbjct: 239 CREATISA 246
Score = 42.3 bits (95), Expect = 3e-04
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENS----PXXXX 559
PG GKT L +AV A I + + + GE +++R+ F A ++ P
Sbjct: 65 PGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIF 124
Query: 558 XXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
+R DA+ D + L L++ V V+ +TNR D +DP + +
Sbjct: 125 IDEIDVLCPRR-DARREQDVRIASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRR 183
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = -2
Query: 769 IGIEPPRGVLMYGPP 725
+G++ PRG+L+YGPP
Sbjct: 51 LGLKWPRGLLLYGPP 65
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -2
Query: 772 QIGIEPPRGVLMYGPP 725
++GI P RG+L++GPP
Sbjct: 314 KMGISPMRGILLHGPP 329
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 69.3 bits (162), Expect = 3e-12
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKAVA + F+ V G E + Y+GE + VRD+F A+ P
Sbjct: 700 PGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFEKARSARPCVIFFDEL 759
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGF-DQTTNVKVIMATNRADTLDPCVAK 379
A R A + + R++ ++L ++DG D + ++ +I A+NR D +DP + +
Sbjct: 760 DSLAPAR-GASGDSGGVMDRVVSQMLAEIDGLSDSSQDLFIIGASNRPDLIDPALLR 815
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPL-PDRRQKRLIFSTITTKMNLSDEVDLEEFVAR-PDRVSGADIN 219
PALLRPGR D+ + + D + + +T K LS++V L + P +GAD+
Sbjct: 811 PALLRPGRFDKLLYVGVNADASYRERVLKALTRKFKLSEDVSLYSVAKKCPSTFTGADMY 870
Query: 218 AICQEAGMHAVQGK 177
A+C +A A + K
Sbjct: 871 ALCADAWFQAAKRK 884
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 68.9 bits (161), Expect = 3e-12
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTMLA+A+A F GSEF + ++G G R VRD+F AK+ SP
Sbjct: 269 PGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAAKKCSPCIIFIDEI 328
Query: 546 XXXATKRFDAQTGADREVQRILL-ELLNQMDGFDQTTNVKVIMATNRADTLDPCVAK 379
R D++ ++ L ++L ++DGF Q + V+ ATN ++LD + +
Sbjct: 329 DAIGGSR----NPKDQQYMKMTLNQMLVELDGFKQNEGIIVVAATNFPESLDKALVR 381
Score = 44.0 bits (99), Expect = 1e-04
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
AL+RPGR DR I P PD +R I + +K+ +++VDL SGAD+ +
Sbjct: 378 ALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGADLANLV 437
Query: 209 QEAGMHAVQ--GKQIYCPSLKISK-RVTRITSRK 117
A + A K + L+ +K R+ + RK
Sbjct: 438 NVAALKAAMDGSKDVTMSDLEFAKDRIMMGSERK 471
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 65.7 bits (153), Expect = 3e-11
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTMLAKAVA F + S V K+ G+ +++R +F LA+ ++P
Sbjct: 154 PGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEI 213
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTN-VKVIMATNRADTLDPCVAKTWP 370
++R +R+ ELL QMDG +T V V+ ATN LD + +
Sbjct: 214 DAIISQRGGEGRSEHEASRRLKTELLIQMDGLQKTNELVFVLAATNLPWELDAAMLRRLE 273
Query: 369 SR 364
R
Sbjct: 274 KR 275
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
A+LR RL+++I PLPD +R +F + + + + V + + SG+DI +C
Sbjct: 267 AMLR--RLEKRILVPLPDPEARRGMFEMLIPSQPGDEPLPHDVLVEKSEGYSGSDIRILC 324
Query: 209 QEAGMHAVQ 183
+EA M ++
Sbjct: 325 KEAAMQPLR 333
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 65.7 bits (153), Expect = 3e-11
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTMLAKAVA F + S V K+ G+ +++R +F LA+ ++P
Sbjct: 145 PGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEI 204
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTN-VKVIMATNRADTLDPCVAKTWP 370
++R +R+ ELL QMDG +T V V+ ATN LD + +
Sbjct: 205 DAIISQRGGEGRSEHEASRRLKTELLIQMDGLQKTNELVFVLAATNLPWELDAAMLRRLE 264
Query: 369 SR 364
R
Sbjct: 265 KR 266
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
A+LR RL+++I PLPD +R +F + + + + V + + SG+DI +C
Sbjct: 258 AMLR--RLEKRILVPLPDPEARRGMFEMLIPSQPGDEPLPHDVLVEKSEGYSGSDIRILC 315
Query: 209 QEAGMHAVQ 183
+EA M ++
Sbjct: 316 KEAAMQPLR 324
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 64.9 bits (151), Expect = 6e-11
Identities = 41/121 (33%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTMLAKA+A A FI V S + K+ G+ ++V VF LA + P
Sbjct: 131 PGTGKTMLAKAIARESEAVFINVKVSNLMSKWFGDAQKLVSAVFSLAYKLQPAIIFIDEV 190
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGF--DQTTNVKVIMATNRADTLDPCVAKTW 373
+R A + + E + DGF DQ V V+ ATNR LD + + +
Sbjct: 191 DSFLGQRRSTDNEA---MSNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRF 247
Query: 372 P 370
P
Sbjct: 248 P 248
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/69 (18%), Positives = 34/69 (49%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
A+LR R + E +PD +++ I + ++ +++ + + +G+DI +C
Sbjct: 242 AILR--RFPQSFEIGMPDCQERAQILKVVLKGESVESDINYDRIARLCEDYTGSDIFELC 299
Query: 209 QEAGMHAVQ 183
++A ++
Sbjct: 300 KKAAYFPIR 308
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 63.3 bits (147), Expect = 2e-10
Identities = 44/124 (35%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTMLAKAVA A FI + S K+ GEG + V+ VF LA + SP
Sbjct: 864 PGTGKTMLAKAVAKEADANFINISMSSITSKWFGEGEKYVKAVFSLASKMSPSVIFVDEV 923
Query: 546 XXXATKR-FDAQTGADREVQRILLELLNQMDGF--DQTTNVKVIMATNRADTLDPCVAKT 376
+R + A R+++ E + DG + V V+ ATNR LD V +
Sbjct: 924 DSMLGRREHPREHEASRKIKN---EFMMHWDGLTTQERERVLVLAATNRPFDLDEAVIRR 980
Query: 375 WPSR 364
P R
Sbjct: 981 LPRR 984
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -1
Query: 371 RLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAICQEAGMH 192
RL R++ LPD + I I K +LS ++D+ E + + SG+D+ +C A
Sbjct: 980 RLPRRLMVGLPDTSNRAFILKVILAKEDLSPDLDIGEIASMTNGYSGSDLKNLCVTAAHR 1039
Query: 191 AVQ 183
++
Sbjct: 1040 PIK 1042
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 63.3 bits (147), Expect = 2e-10
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTM+ KA+A A F + S K++GEG ++VR +F +A P
Sbjct: 52 PGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEI 111
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQ-TTNVKVIMATNRADTLDPCVAKTWP 370
++R G +R+ + L +M+GFD + + +I ATNR LD +
Sbjct: 112 DSLLSQR--KSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLT 169
Query: 369 SR 364
R
Sbjct: 170 KR 171
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 62.1 bits (144), Expect = 4e-10
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GK+ LAKAVA + F V S+ V K++GE ++V ++F +A+E++P
Sbjct: 174 PGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEI 233
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQT-TNVKVIMATNRADTLDPCVAKTWP 370
R + +RI ELL QM G V V+ ATN LD + + +
Sbjct: 234 DSLCGTR--GEGNESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYALDQAIRRRFD 291
Query: 369 SR 364
R
Sbjct: 292 KR 293
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 61.7 bits (143), Expect = 5e-10
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTMLAKAVA A F V S K++GE ++V+ +F++A P
Sbjct: 258 PGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEKLVKTLFQVAISRQPSVIFMDEI 317
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTN--VKVIMATNRADTLDPCVAK 379
+ R ++ A R R+ E L Q DG + V +I ATN+ LD V +
Sbjct: 318 DSIMSTRSTSENEASR---RLKSEFLIQFDGVTSNPDDLVIIIGATNKPQELDDAVLR 372
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFST-ITTKMNLSDEVDLEEFVARPDRVSGADINAI 213
A+LR RL ++I PLPD ++L+F T + + + + D+++ V + SG+D+ A+
Sbjct: 369 AVLR--RLVKRIYVPLPDSNVRKLLFKTKLKCQPHSLSDGDIDKIVKETEGYSGSDLQAL 426
Query: 212 CQEAGMHAVQ 183
C+EA M ++
Sbjct: 427 CEEAAMMPIR 436
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 61.3 bits (142), Expect = 7e-10
Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTMLAKAVA A FI + S K+ GEG + V+ VF LA + +P
Sbjct: 1007 PGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEV 1066
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGF--DQTTNVKVIMATNRADTLDPCVAKTW 373
+R G ++++ E + DG V V+ ATNR LD V +
Sbjct: 1067 DSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRL 1124
Query: 372 PSR 364
P R
Sbjct: 1125 PRR 1127
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -1
Query: 371 RLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAICQEA 201
RL R++ LPD + I S I K ++ +VDLE D SG+D+ +C A
Sbjct: 1123 RLPRRLMVNLPDATNRSKILSVILAKEEIAPDVDLEAIANMTDGYSGSDLKNLCVTA 1179
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 61.3 bits (142), Expect = 7e-10
Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTMLAKAVA A FI + S K+ GEG + V+ VF LA + +P
Sbjct: 994 PGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEV 1053
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGF--DQTTNVKVIMATNRADTLDPCVAKTW 373
+R G ++++ E + DG V V+ ATNR LD V +
Sbjct: 1054 DSMLGRR--ENPGEHEAMRKMKNEFMINWDGLRTKDKERVLVLAATNRPFDLDEAVIRRL 1111
Query: 372 PSR 364
P R
Sbjct: 1112 PRR 1114
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -1
Query: 371 RLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAICQEA 201
RL R++ LPD + I S I K ++++VDLE D SG+D+ +C A
Sbjct: 1110 RLPRRLMVNLPDSANRSKILSVILAKEEMAEDVDLEAIANMTDGYSGSDLKNLCVTA 1166
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 60.5 bits (140), Expect = 1e-09
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTM+AKA+A+ A+FI V S K+ GE + VR +F LA + SP
Sbjct: 457 PGTGKTMMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEV 516
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGF--DQTTNVKVIMATNRADTLDPCVAKTW 373
+R + G +++I E + DG + + V+ ATNR LD + + +
Sbjct: 517 DSMLGQR--TRVGEHEAMRKIKNEFMTHWDGLMSNAGDRILVLAATNRPFDLDEAIIRRF 574
Query: 372 PSR 364
R
Sbjct: 575 ERR 577
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 60.5 bits (140), Expect = 1e-09
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTMLAKA+A A+FI V S K+ GE + VR +F LA + SP
Sbjct: 564 PGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEV 623
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGF--DQTTNVKVIMATNRADTLDPCVAKTW 373
+R + G +++I E ++ DG + V+ ATNR LD + + +
Sbjct: 624 DSMLGQR--TRVGEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPFDLDEAIIRRF 681
Query: 372 PSR 364
R
Sbjct: 682 ERR 684
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 60.5 bits (140), Expect = 1e-09
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTMLAKA+A A+FI V S K+ GE + VR +F LA + SP
Sbjct: 559 PGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLASKVSPTIIFVDEV 618
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGF--DQTTNVKVIMATNRADTLDPCVAKTW 373
+R + G +++I E ++ DG + V+ ATNR LD + + +
Sbjct: 619 DSMLGQR--TRVGEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPFDLDEAIIRRF 676
Query: 372 PSR 364
R
Sbjct: 677 ERR 679
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 58.4 bits (135), Expect = 5e-09
Identities = 38/120 (31%), Positives = 53/120 (44%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT A+ +A+ + V + KY GE R++ VF A E
Sbjct: 370 PGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESERLLGAVFSQANELPDGAIIFLDE 429
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCVAKTWPS 367
D++ +R+L LL Q+DGF+Q V VI ATNR LDP + + S
Sbjct: 430 IDAFAISRDSEM--HEATRRVLSVLLRQIDGFEQEKKVVVIAATNRKQDLDPALISRFDS 487
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 58.0 bits (134), Expect = 6e-09
Identities = 40/121 (33%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTMLAKA+A A FI V S + K+ G+ ++V VF LA + P
Sbjct: 128 PGTGKTMLAKAIAKESGAVFINVRVSNLMSKWFGDAQKLVSAVFSLAYKLQPAIIFIDEV 187
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGF--DQTTNVKVIMATNRADTLDPCVAKTW 373
+R A + + E + DGF D V V+ ATNR LD + +
Sbjct: 188 ESFLGQRRSTDHEA---MANMKTEFMALWDGFSTDPHARVMVLAATNRPSELDEAILRRL 244
Query: 372 P 370
P
Sbjct: 245 P 245
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/69 (24%), Positives = 34/69 (49%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAIC 210
A+LR RL + E +PDRR++ I + ++D + + +G+DI +C
Sbjct: 239 AILR--RLPQAFEIGIPDRRERAEILKVTLKGERVEPDIDFDHIARLCEGYTGSDIFELC 296
Query: 209 QEAGMHAVQ 183
++A ++
Sbjct: 297 KKAAYFPIR 305
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 55.6 bits (128), Expect = 3e-08
Identities = 43/129 (33%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKAVA F V + K+ GE RMVR +F LA+ +P
Sbjct: 281 PGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEI 340
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQT-TN-------VKVIMATNRADTLDP 391
R +G +R+ ELL Q+DG T TN V V+ ATN +D
Sbjct: 341 DSLCNSR--GGSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDE 398
Query: 390 CVAKTWPSR 364
+ + R
Sbjct: 399 ALRRRLEKR 407
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 52.4 bits (120), Expect = 3e-07
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKA+A A FI + GS K+ G+ ++ + +F A + +P
Sbjct: 395 PGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFATKLAPVIIFVDEI 454
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIM--ATNRADTLDPCVAKTW 373
R + +R+ E + DG + ++++ ATNR LD V +
Sbjct: 455 DSLLGAR--GGSSEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPFDLDDAVIRRL 512
Query: 372 PSR 364
P R
Sbjct: 513 PRR 515
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -1
Query: 371 RLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAICQEAGMH 192
RL R+I LPD + I T NL + E+ + SG+D+ +C A
Sbjct: 511 RLPRRIYVDLPDAENRLKILKIFLTPENLESDFQFEKLAKETEGYSGSDLKNLCIAAAYR 570
Query: 191 AVQ 183
VQ
Sbjct: 571 PVQ 573
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 52.0 bits (119), Expect = 4e-07
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+LAKA+A A FI + GS K+ G+ ++ + +F A + +P
Sbjct: 194 PGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEV 253
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIM--ATNRADTLDPCVAKTW 373
R A +R+ E + DG + ++++ ATNR LD V +
Sbjct: 254 DSLLGARGGA--FEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPFDLDDAVIRRL 311
Query: 372 PSR 364
P R
Sbjct: 312 PRR 314
Score = 34.7 bits (76), Expect = 0.069
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = -1
Query: 371 RLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAICQEAGMH 192
RL R+I LPD + I T NL + ++ + SG+D+ +C A
Sbjct: 310 RLPRRIYVDLPDAENRLKILKIFLTPENLETGFEFDKLAKETEGYSGSDLKNLCIAAAYR 369
Query: 191 AVQ 183
VQ
Sbjct: 370 PVQ 372
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 51.6 bits (118), Expect = 6e-07
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Frame = -3
Query: 729 HPGCGKTMLAKAVAHHXTAAFIRVV-----GSEFVQKYLGEGPRMVRDVFRLAKENSPXX 565
HPG GKT++ +A+ R+ G++ + KY+G+ R +R +F++A++ P
Sbjct: 761 HPGTGKTLVVRALIGSLARGNRRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSI 820
Query: 564 XXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCV 385
A KR Q V LL LL DG +V VI ATN D +DP +
Sbjct: 821 IFFDEIDGLAPKRSRQQDQTHSSVVSTLLALL---DGLKSRGSVVVIGATNYPDAIDPAL 877
Query: 384 AK 379
+
Sbjct: 878 RR 879
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDR-VSGADINA 216
PAL RPGR DR+I FPLP + I S T K L +++A+ +GADI A
Sbjct: 875 PALRRPGRFDREIYFPLPSVDDRAAIISLHTRKWPKPVSGYLLKWIAKETAGFAGADIQA 934
Query: 215 ICQEAGMHAV 186
+C +A M A+
Sbjct: 935 LCTQAAMIAL 944
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 51.6 bits (118), Expect = 6e-07
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAA-----FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXX 562
PG GKT++A+A+A + A F G++ + K++GE R ++ +F A+ N P
Sbjct: 424 PGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSII 483
Query: 561 XXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 394
A R Q + LL L MDG D V +I ATNR D +D
Sbjct: 484 FFDEIDGLAPVRSSKQEQIHNSIVSTLLAL---MDGLDSRGQVVLIGATNRVDAID 536
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDL-EEFVARPDRVSGADINAI 213
AL RPGR DR+ F LP + I T K +L EE A GAD+ A+
Sbjct: 538 ALRRPGRFDREFNFSLPGCEARAEILDIHTRKWKHPPTRELKEELAATCVGYCGADLKAL 597
Query: 212 CQEAGMHAVQGK--QIY 168
C EA + A + K Q+Y
Sbjct: 598 CTEAAIRAFREKYPQVY 614
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 50.8 bits (116), Expect = 1e-06
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVV-GSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXX 550
PG GKT++A+ + ++V G E + K++GE + VRD+F A+++
Sbjct: 259 PGTGKTLMARQIGKMLNGKDPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTLGDASE 318
Query: 549 XXXXATKRFDA---QTGADREV----QRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 391
DA G+ R+ I+ +LL ++DG + NV +I TNR D LD
Sbjct: 319 LHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVEALNNVLLIGMTNRKDLLDE 378
Query: 390 CVAKTWPSRQKNRVSTS 340
+ + P R + +V S
Sbjct: 379 ALLR--PGRLEVQVEIS 393
Score = 48.8 bits (111), Expect = 4e-06
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Frame = -1
Query: 389 ALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMN----LSDEVDLEEFVARPDRVSGADI 222
ALLRPGRL+ ++E LPD + I T KM L +++L+E AR SGA++
Sbjct: 379 ALLRPGRLEVQVEISLPDEAGRLQILQIHTNKMKENSFLGTDINLQELAARTKNYSGAEL 438
Query: 221 NAICQEAGMHAV 186
+ + A +A+
Sbjct: 439 EGVVKSATSYAL 450
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/72 (34%), Positives = 42/72 (58%)
Frame = -1
Query: 383 LRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAICQE 204
+R GR+DR++ LPD +Q+ IF + NL++++D + V R SGADI + E
Sbjct: 653 VRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKNLAEDIDFGKLVFRTVGFSGADIRNLVNE 712
Query: 203 AGMHAVQGKQIY 168
A + +V+ + Y
Sbjct: 713 AAIMSVRKGRSY 724
Score = 38.7 bits (86), Expect = 0.004
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKT+ A+ +A F+ G+EF G + ++F +A+ N+P
Sbjct: 535 PGTGKTLFARTLAKESGLPFVFASGAEFTDSE-KSGAAKINEMFSIARRNAPAFVFVDEI 593
Query: 546 XXXATK--RFDAQTGADREVQRILLELLNQMDGFDQTT---NVKVIMATNRADTLD 394
A + R D + A E L+ + G D+ + V I ATNR D LD
Sbjct: 594 DAIAGRHARKDPRRRATFEALIAQLDGEKEKTGIDRFSLRQAVIFICATNRPDELD 649
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family
Length = 1025
Score = 39.1 bits (87), Expect = 0.003
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 2/135 (1%)
Frame = -3
Query: 723 GCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXXX 544
G GKTMLAKAVA A I + + ++ EG + V+ VF LA + SP
Sbjct: 780 GTGKTMLAKAVATEAGANLINM----SMSRWFSEGEKYVKAVFSLASKISPSIIFLD--- 832
Query: 543 XXATKRFDAQTGADREVQRILLELLNQMDGF--DQTTNVKVIMATNRADTLDPCVAKTWP 370
+ ++ R + E + DG ++ V V+ ATNR LD V + P
Sbjct: 833 -------EVESMLHRYRLKTKNEFIINWDGLRTNEKERVLVLAATNRPFDLDEAVIRRLP 885
Query: 369 SRQKNRVSTSR*ASK 325
R + +R SK
Sbjct: 886 HRLMVGLPDARSRSK 900
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 34.3 bits (75), Expect = 0.091
Identities = 28/114 (24%), Positives = 49/114 (42%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTM+A+ +A + + G + V + + ++F AK+++
Sbjct: 394 PGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKSNKGLLLFIDE 452
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCV 385
+ + E QR L L G DQ+ ++ +++ATNR LD V
Sbjct: 453 ADAFL--CERNSTYMSEAQRSALNALLFRTG-DQSRDIVLVLATNRPGDLDSAV 503
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 33.5 bits (73), Expect = 0.16
Identities = 28/114 (24%), Positives = 48/114 (42%)
Frame = -3
Query: 726 PGCGKTMLAKAVAHHXTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPXXXXXXXX 547
PG GKTM+A+ +A + + G + V + + +F AK+++
Sbjct: 379 PGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGSQAVTKIHQIFDWAKKSNKGLLLFIDE 437
Query: 546 XXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPCV 385
+ + E QR L L G DQ+ ++ +++ATNR LD V
Sbjct: 438 ADAFL--CERNSTYMSEAQRSALNALLFRTG-DQSRDIVLVLATNRRGDLDSAV 488
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -1
Query: 392 PALLRPGRLDRKIEFPLPD 336
PA+LRPGR+D I FPL D
Sbjct: 337 PAMLRPGRVDVHIHFPLCD 355
>At3g07540.1 68416.m00900 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 841
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +1
Query: 166 QYICFPXTACMPAS*QMALMSAPDTRSGRATNSSKSTSSERFILVVIVEKIKRF*RLSGS 345
Q + FP + S + ++ PD + + SS ST+ +RF V+ R+ S +
Sbjct: 315 QNLGFPRISSASTSPERGMIRTPDAYARSSMYSSVSTTPDRFFRKVLDSSPPRWNDFSRN 374
Query: 346 GNSIFLS 366
S+FLS
Sbjct: 375 VKSLFLS 381
>At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 850
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 263 EFVARPDRVSGADINAICQEAGMHAVQGKQIYC 165
EF RPD ++ ++ C G H++ GKQ++C
Sbjct: 222 EFGCRPDNITLVNVLPPCASLGTHSL-GKQLHC 253
>At1g51850.1 68414.m05845 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 865
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +2
Query: 521 SNLLVAMASISSMKMIAG---LFSLARRKTSRTIRGPSPKY 634
S ++ +ASI+S+ ++ G LF + R+K S + GP P Y
Sbjct: 485 SVIVPVVASIASIAVLIGALVLFFILRKKKSPKVEGPPPSY 525
>At1g51820.1 68414.m05841 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase GI:1321686 from (Arabidopsis thaliana); contains
leucine rich repeat (LRR) domains, Pfam:PF00560;
contains protein kinase domain, Pfam:PF00069
Length = 885
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +2
Query: 521 SNLLVAMASISSMKMIAG---LFSLARRKTSRTIRGPSPKY 634
S ++ +ASI+S+ ++ G LF + R+K S + GP P Y
Sbjct: 505 SVIVPVVASIASIAVLIGALVLFLILRKKRSPKVEGPPPSY 545
>At1g64850.1 68414.m07352 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 162
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -1
Query: 368 LDRKIEFPLPDRRQKRLIFSTITT-KMNLSDEVDLEEFVARPDRVSGADINAICQ 207
+++++ P D K L+ S +T +NL E+D EEFV ++++ N + Q
Sbjct: 54 INKRLPGPHFDPPSKDLVNSIMTDCDINLDGELDREEFVKFIEQITAETFNVVSQ 108
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,107,349
Number of Sequences: 28952
Number of extensions: 291590
Number of successful extensions: 1079
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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