Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J15
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839...    63   2e-10
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228...    40   0.002
11_01_0281 + 2086674-2087652,2089200-2089483                           31   1.1  
12_01_0285 + 2120130-2121204,2122842-2123116                           30   2.5  
03_02_0184 + 6232429-6232515,6232634-6232751,6233198-6233286,623...    28   7.6  
01_06_1133 + 34781799-34782071,34782168-34783166,34783252-347836...    28   7.6  

>04_04_1285 -
           32382614-32382720,32383032-32383710,32383816-32383926,
           32384007-32384065,32384163-32384271,32384387-32384575,
           32384650-32385476,32385501-32385633
          Length = 737

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
 Frame = -2

Query: 694 LSEGAFSHAWAGARATHXXXXXXXXXXXXXGDVMATTETSEKDALTSGI-RIGWSTDDSS 518
           L +G F++ W+GARAT                     E  +  A    + R+G S     
Sbjct: 78  LHDGGFAYCWSGARATVGVRGGGKYCFGCKVVAEQAVEMEDTAADQQHLCRVGVSRGGDP 137

Query: 517 LH-LGESEFSWGFESTGRIVNNGEYKEYGKSLNEKDVVGAYLDLESEPCV-VSYTLNGAP 344
           +  LGE+  S+GF  TG+  + G++ EYG      D V   +DL+S+P   + ++ NG  
Sbjct: 138 VGALGETGHSFGFGGTGKFSHQGKFVEYGVKFGVGDTVVCAVDLDSKPLASIGFSRNGEW 197

Query: 343 LGTAFEFPRSALG-------------DRTLYPHVLTKNMCYKVNFGYE 239
           LG A  F  S  G             +  ++PHVL KN+  ++ F  E
Sbjct: 198 LGIAKHFDASDKGLGLVESPVSSMQWESAIFPHVLLKNVVVEMQFSKE 245


>07_03_1345 +
           25919379-25920866,25921342-25921962,25922733-25922893,
           25923284-25923422,25923509-25923592,25923944-25923982,
           25924037-25924222,25924347-25924478,25924810-25925009,
           25925294-25925498,25925618-25925944
          Length = 1193

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
 Frame = -2

Query: 559 TSGIR-IGWSTDDSSLH----LGESEFSWGFESTGRIVNNGEYKEYGKSLNEKDVVGAYL 395
           TSG++ +GW+T          +G+S+ S+ F+       N + ++YG+     DV+G  +
Sbjct: 156 TSGVQQLGWATLSCPFTDQKGVGDSDDSYAFDGRRVTKWNNDPEQYGQMWAVGDVIGCCI 215

Query: 394 DLESEPCVVSYTLNGAPLGTAFEFPRSALGDRTLYPHV-LTKNMCYKVNFG 245
           +L++    +S+  NG  LG AF+  R     +  YP + L++     +NFG
Sbjct: 216 NLDAGE--ISFYRNGNFLGVAFDGIRKVGPRKGYYPAISLSEGERCHLNFG 264


>11_01_0281 + 2086674-2087652,2089200-2089483
          Length = 420

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = -2

Query: 559 TSGIRIGWSTDDSSLH--LGESEFSWGF-ESTGRIVNNGEYKEYG-KSLNEKDVVGAYLD 392
           T   R+GW+T+++ +H  +G   F +G+ +  G  V+      Y  +   E DV+G Y+ 
Sbjct: 228 TGHTRLGWATNNADIHAPVGYDVFGFGYRDMDGTKVHKAWRANYADQGYGEGDVLGFYIH 287

Query: 391 L 389
           L
Sbjct: 288 L 288


>12_01_0285 + 2120130-2121204,2122842-2123116
          Length = 449

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = -2

Query: 559 TSGIRIGWSTDDSSLH--LGESEFSWGF-ESTGRIVNNGEYKEYG-KSLNEKDVVGAYLD 392
           T   R+GW+T+++ +H  +G   F +G+ +  G  V+      Y  +   + DV+G Y+ 
Sbjct: 225 TGHTRLGWATNNADIHAPVGYDVFGFGYRDMDGTKVHKAWRANYAEQGYGDGDVLGFYIH 284

Query: 391 L 389
           L
Sbjct: 285 L 285


>03_02_0184 +
           6232429-6232515,6232634-6232751,6233198-6233286,
           6233364-6233428,6233520-6233608,6234167-6234300,
           6234387-6235133
          Length = 442

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +3

Query: 276 VSTCGYSVRSPSALRGNSKAVPSGAPLSVYDTTHGSDSKSK*APTTSFSLSDFPYSLYSP 455
           +S   +S  SP+A    +  V  GAPL+ + T  G  +    AP   F  +  P  L SP
Sbjct: 299 LSARSFSFASPAARSTTTPPVHRGAPLTPFSTKGGQKAP---APAQQFPRTPRPSFLQSP 355


>01_06_1133 +
           34781799-34782071,34782168-34783166,34783252-34783663,
           34783727-34784670
          Length = 875

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 335 GAERRAVERVRHDTRLRLQVQIST 406
           G +RR ++R+RHD+ LR+ + + T
Sbjct: 461 GYKRRNLQRIRHDSELRMLICVHT 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,426,336
Number of Sequences: 37544
Number of extensions: 288187
Number of successful extensions: 828
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)