Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J15
         (809 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   2e-25
SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14)                  86   4e-17
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)                  52   4e-07
SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   6e-05
SB_48080| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   8e-05
SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_42297| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)                    31   1.5  
SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_57883| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-10)                 29   5.9  
SB_39745| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score =  113 bits (272), Expect = 2e-25
 Identities = 57/158 (36%), Positives = 87/158 (55%)
 Frame = -2

Query: 718 PELXSVVPLSEGAFSHAWAGARATHXXXXXXXXXXXXXGDVMATTETSEKDALTSGIRIG 539
           PE  S+  L +  F     G RAT+              +  A  +  + +     +R+G
Sbjct: 291 PEALSLTILKDEGFPFMAGGVRATYGATSGKICFECKLTET-AEVDLPDTEEPKHFVRVG 349

Query: 538 WSTDDSSLHLGESEFSWGFESTGRIVNNGEYKEYGKSLNEKDVVGAYLDLESEPCVVSYT 359
           WS+D ++L LGE   S+GF+STG+   N E+ E+G++    DV+  YLDLES P  +S++
Sbjct: 350 WSSDSANLQLGEVALSYGFDSTGKKCTNNEFTEFGQTFTAGDVITCYLDLESSPKQISFS 409

Query: 358 LNGAPLGTAFEFPRSALGDRTLYPHVLTKNMCYKVNFG 245
            NG  LG+AF+ P  A G + L+PHV+ KN+   +NFG
Sbjct: 410 KNGEDLGSAFDLPEDAQG-KALFPHVMIKNIDCSLNFG 446


>SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14)
          Length = 453

 Score = 85.8 bits (203), Expect = 4e-17
 Identities = 36/102 (35%), Positives = 60/102 (58%)
 Frame = -2

Query: 550 IRIGWSTDDSSLHLGESEFSWGFESTGRIVNNGEYKEYGKSLNEKDVVGAYLDLESEPCV 371
           +R+GWS D ++L +GE   S+G+  T +   + ++ +YG+  +  D++  Y+DL++ P  
Sbjct: 13  VRVGWSVDSANLQVGEDALSYGYGGTAKCSVSNKFFDYGERYSSNDIITCYIDLDASPKC 72

Query: 370 VSYTLNGAPLGTAFEFPRSALGDRTLYPHVLTKNMCYKVNFG 245
           + +  NG  LG AF     A  ++  YPHV  KNM  +VNFG
Sbjct: 73  IFFAKNGLYLGVAFRLGPEAY-NKAFYPHVTVKNMRVRVNFG 113


>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
          Length = 635

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 24/66 (36%), Positives = 38/66 (57%)
 Frame = -2

Query: 547 RIGWSTDDSSLHLGESEFSWGFESTGRIVNNGEYKEYGKSLNEKDVVGAYLDLESEPCVV 368
           R+GWST  ++L LG  E  +GF  TG+   N ++  YG+     D +G Y++L++    V
Sbjct: 48  RVGWSTAHATLDLGTDEEGFGFGGTGKKSYNRQFDTYGEPFGINDTIGCYINLDNG--TV 105

Query: 367 SYTLNG 350
            Y+ NG
Sbjct: 106 KYSKNG 111


>SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
 Frame = -2

Query: 568 DALTSGIRIGWSTDDSSLH---------LGESEFSWGFESTGRIVNNGEYKEYGKSLNEK 416
           D   + + IG +T D+ LH         +G  + SWG    G I + G+  ++ +   + 
Sbjct: 131 DVRGTSMMIGVATQDAMLHTDNYEYVNLVGRDQESWGLSHRGEIWHGGQKWKFCEPFFDS 190

Query: 415 DVVGAYLDLESEPCVVSYTLNGAPLGTAFEFPRSALGDR--TLYPHVLTKNMCYKVNFGY 242
            V+G  LD++     +S+  NG PLG AF    + L DR   LYP   +     +V  GY
Sbjct: 191 TVIGVLLDMDKG--TISFFKNGQPLGVAF----TGLQDRGCELYPIASSTASESEVELGY 244


>SB_48080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
 Frame = -2

Query: 550 IRIGWSTD------DSSLHLGESEFSWGFESTGRIVNNGEYKE-YGKSLNEKDVVGAYLD 392
           +++GW+ D      D+    G+   SW ++ T  +  +   KE YG+   E D VG  +D
Sbjct: 119 MQLGWADDGFSAAADTGQGCGDDSHSWAYDGTRTLKWHANAKEPYGRKWKEGDTVGIAVD 178

Query: 391 LESEPCVVSYTLNG---APLGTAF 329
           L+     VS++LNG   +P+GTAF
Sbjct: 179 LDQGE--VSFSLNGDWSSPMGTAF 200


>SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -2

Query: 460 NNGEYKEYGKSLNEKDVVGAYLDLESEPCVVSYTLNGAPLGTAF 329
           ++G  K YG +    DV+G  L+L    C   YT NG  LG AF
Sbjct: 101 SSGTGKPYGPTFTTGDVIGCGLNLIDNTCF--YTKNGVNLGIAF 142


>SB_42297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = -2

Query: 601 DVMATTETSEKDALTSGIRIGWSTDDSSLHLGESEFSWGFESTGRIVNNGEYKEYGKSLN 422
           D++  T TS     + G R  WST+D +  +GE  +S  F+   R+    + K    +  
Sbjct: 177 DIIPPTVTSLLKGSSMGTRKYWSTEDKA--IGERVYSHLFKRGSRLPRVHDIKHVMDTCE 234

Query: 421 EKDVVGAYLDLESEPCVVSYTL 356
           ++D     L L S    + Y L
Sbjct: 235 DEDFQMLMLSLGSNQPTIQYRL 256


>SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)
          Length = 262

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
 Frame = -2

Query: 481 ESTGRIVNNGEYKE-YGKSLNEKD--VVGAYLDLESEPCVVSY-TLNGAP---LGTAFEF 323
           E TG  VNNG YK   G  ++E+    V  +L +E  P V +    N  P   LG    F
Sbjct: 52  ECTGLRVNNGAYKNGLGDKMDERGRLKVDEFLQVEGTPDVYAIGDCNNTPEVKLGMLANF 111

Query: 322 PRSALGDRTLYPHVLTKNMCYKVNFGYERYNMLSKTKIVRKRIEVP 185
             + +GD     H       YK+N       + S   I   R + P
Sbjct: 112 HAAHVGDNLKKKHEGQALKPYKINTTRFSVTLQSVQTITNNRPKPP 157


>SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +3

Query: 351 PLSVYDTTHGSDSKSK*APTTSFSLSDFPYSLYSPLLTMRPVLSKPQLNSLS 506
           P+++   T  S S S  +PT++ +L   P S   PLLT     SKP  +S S
Sbjct: 687 PVNIMIETKKSVSSSSSSPTSAPTLVVPPTSTTIPLLTADTTTSKPPSSSTS 738


>SB_57883| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-10)
          Length = 325

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 455 WRIQRIREIA*RKGCCWCL 399
           WRI  +R  A R  CCWC+
Sbjct: 276 WRIPGMRSAALRLFCCWCV 294


>SB_39745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -2

Query: 433  KSLNEKDVVGAYLDLESEPCVVSYTLNGAPLGTAFEFPRS-ALGDRTLYPHVLTKNMCY 260
            KS+N K V G +  L     + + +++ A +    +  R  AL DR+L+ HV+  N C+
Sbjct: 849  KSVNIKKVPGGFYFLHIIFHLAALSVDPADVSIRGDSTREKALFDRSLHAHVIENNHCH 907


>SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 348 APLSVYDTTHGSDSKSK*APTTSFSLSDFPYSLYSPLLTM---RPVLSKPQLNS 500
           +PL  Y +++GS  ++     +SF  S    S++ PL T       L+ PQL+S
Sbjct: 361 SPLGQYTSSYGSQKQANPYRASSFVRSSLHGSIFDPLTTQLQSPKSLNSPQLHS 414


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,682,016
Number of Sequences: 59808
Number of extensions: 330481
Number of successful extensions: 949
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)