Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J14
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)                      29   5.7  
SB_56224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)                    28   7.6  
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           28   7.6  

>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
          Length = 186

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/49 (38%), Positives = 21/49 (42%)
 Frame = -1

Query: 490 GDFGATGGDETIVEGGHGGATSTQYGPPGHVAGPLH*KKNSLLSFGGST 344
           G  GATGG      GGHGGAT    G  G   G       +    GG+T
Sbjct: 99  GGGGATGGGGGAT-GGHGGATGGGVGATGGHGGATGGHGGATGGHGGAT 146


>SB_56224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 798

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -1

Query: 490 GDFGATGGDETIVEGGHGGATSTQYGPPG 404
           G  G TGG  T   GG GG TST  G  G
Sbjct: 196 GGVGTTGGS-TGAAGGGGGGTSTSTGSSG 223


>SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)
          Length = 782

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -1

Query: 490 GDFGATGGDETIVEGGHGGATSTQYGPPG 404
           G  G TGG  T   GG GG TST  G  G
Sbjct: 242 GGVGTTGGS-TGAAGGGGGGTSTSTGSSG 269


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -3

Query: 410 SRTRRWSPSLKEKQSFKLWW*YKIS--IYF*VKAEQSN*LTSSSKIVFPTTICLLVAVER 237
           +R  +W P +  K + KLWW +  +  ++F  +  + + L+ ++K      + + +  E 
Sbjct: 268 ARYHKWRPKVPVKNNAKLWWQFASTCILHFIQERNRHHTLSFATKRAHDLVVYVKLYTEH 327

Query: 236 LVNSHL 219
           L+++ L
Sbjct: 328 LMSNQL 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,183,774
Number of Sequences: 59808
Number of extensions: 314608
Number of successful extensions: 785
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)