Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_J02
         (803 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.6  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   5.0  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -2

Query: 445 GGHGGATSTQYGPPGHVAGPLH*KKNSLLSFGGSTKYLFISELKP 311
           GG  GA   Q GPP H   P+  + N      G+T     S L P
Sbjct: 191 GGQQGANMHQQGPP-HQQPPIQQQPNQGQQPPGNTAAALPSPLYP 234


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -2

Query: 445 GGHGGATSTQYGPPGHVAGPLH*KKNSLLSFGGSTKYLFISELKP 311
           GG  GA   Q GPP H   P+  + N      G+T     S L P
Sbjct: 193 GGQQGANMHQQGPP-HQQPPIQQQPNQGQQPPGNTAAALPSPLYP 236


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 692 DEVTSXLXAXWVLXWDXNIRLLSGFL 769
           D +T+ L     L WD   R   GFL
Sbjct: 86  DLITAFLSVLPQLAWDITYRFYGGFL 111


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,636
Number of Sequences: 336
Number of extensions: 2763
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)