Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I24
         (851 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)     30   2.1  
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  

>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
          Length = 1021

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/63 (22%), Positives = 29/63 (46%)
 Frame = -3

Query: 375 GHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGSVRKVEYTADD 196
           GH + +  H K +  +   D   G    +HE  +GD  HG+  +   +G +++ + + + 
Sbjct: 332 GHEKGDMQHGKKNMGHEKGDMQHGKKNMEHE--EGDMQHGKKNMGHEEGDMQQGKKSMEH 389

Query: 195 HHG 187
             G
Sbjct: 390 EKG 392



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -3

Query: 375 GHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGSVR 220
           GH E +  H K +  +   D   G    +HE  +GD  HG+  +    G ++
Sbjct: 248 GHEEGDMQHGKKNIEHEKGDMQHGKKNVEHE--EGDMQHGKKNMEHEKGDMQ 297



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -3

Query: 393 HKVLVAGHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGSVR 220
           H+    GH + +  H K +  +   D   G    +HE   GD  HG+  +   +G ++
Sbjct: 228 HEKKNMGHEKGDMQHGKKNMGHEEGDMQHGKKNIEHEK--GDMQHGKKNVEHEEGDMQ 283


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -3

Query: 339  DFAYSVADGHSGDNKSQHESRDGDAV--HGEYTLLEADGSVRKVEYTAD 199
            D  +   +   GD+  +H+  DGD+V  H +Y     D  VR  +Y  D
Sbjct: 1863 DVRHDEYNDEDGDSDVRHDDYDGDSVVRHDDYNDDNGDSDVRHDDYDGD 1911


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,523,645
Number of Sequences: 59808
Number of extensions: 154704
Number of successful extensions: 602
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)