Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I23
         (813 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1938| Best HMM Match : No HMM Matches (HMM E-Value=.)               79   6e-15
SB_1048| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_23544| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)                   29   3.4  
SB_58579| Best HMM Match : DMP1 (HMM E-Value=2.3)                      29   5.9  
SB_23712| Best HMM Match : HSBP1 (HMM E-Value=0.35)                    28   7.8  

>SB_1938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 34/49 (69%), Positives = 41/49 (83%)
 Frame = -3

Query: 247 KGPSGLDGKFQSGSELDFYIDNDMIHIADTKVAHRYGDFFIRKLLKFEE 101
           KG  GLDG+ QS SE+DFYID DMIHIADTKV  RYG+FF+R++ KF+E
Sbjct: 191 KGTDGLDGEQQSSSEVDFYIDRDMIHIADTKVDRRYGEFFMRQIYKFDE 239



 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 27/37 (72%), Positives = 33/37 (89%)
 Frame = -2

Query: 461 QTQVFMDEVRQQKMLPTIRSYLKLYTTLPMAKLAAFM 351
           Q +VFM+EV QQ M+P IRSYLKLYTT+P+AKLAAF+
Sbjct: 143 QLKVFMNEVAQQSMIPVIRSYLKLYTTMPIAKLAAFL 179



 Score = 34.7 bits (76), Expect = 0.090
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -2

Query: 761 MQPXXQLFSSRSYXXDQIXXQTEQMYHLLAICLVLHPQ 648
           +Q    +  ++SY  ++I  + +QMY+LLAI L L PQ
Sbjct: 100 IQRTKNMLQTKSYQYEEIMKKNDQMYNLLAIALTLCPQ 137


>SB_1048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 506 PIEPGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTT 381
           P +P   YG+  ++ ++   + +V Q K +P  R   K YTT
Sbjct: 46  PSDPDLYYGQGTLREKSTFRLPDVNQTKQMPCPRPMPKTYTT 87


>SB_23544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 506 PIEPGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLKLYTT 381
           P +P   YG+  ++ ++   + +V Q K +P  R   K YTT
Sbjct: 20  PSDPDLYYGQGTLREKSTFRLPDVNQTKQMPCPRPMPKTYTT 61


>SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)
          Length = 526

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 411 HTFLFETIHHPPDGETSCIHVCCSR 337
           H  L+ TIHH P G  +   +C SR
Sbjct: 251 HVRLYNTIHHRPTGNAAQTMICASR 275


>SB_58579| Best HMM Match : DMP1 (HMM E-Value=2.3)
          Length = 682

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = -2

Query: 572 DLGEFESCFTFACPKFLSACPPPIEPGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLK 393
           D  E  S  + + P F   CP   E   N   D +  Q Q+ +DE     +L TI  YLK
Sbjct: 141 DKEEILSIQSSSAPLFQGHCPSNCEQKKNLENDTLTDQAQINIDE-----LLETIGFYLK 195


>SB_23712| Best HMM Match : HSBP1 (HMM E-Value=0.35)
          Length = 437

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -3

Query: 229 DGKFQSGSELDFYIDNDMIHIADTKVAHRYGDFFIRKLLKFEELNRKLHHI 77
           D  F S    D+Y ++    + ++K   R  D++ +KL +++   +K   I
Sbjct: 286 DANFYSSFSCDYYTEDQFNELVNSKTEKRKRDYYDKKLSEYKSNVKKTWRI 336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,334,283
Number of Sequences: 59808
Number of extensions: 541934
Number of successful extensions: 1311
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)