Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_I22
(796 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33260.1 68415.m04077 tryptophan/tyrosine permease family pro... 31 0.88
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 30 1.5
At1g21380.1 68414.m02675 VHS domain-containing protein / GAT dom... 30 2.0
At4g24060.1 68417.m03456 Dof-type zinc finger domain-containing ... 29 4.7
At1g67680.1 68414.m07723 expressed protein 29 4.7
At1g08000.2 68414.m00873 zinc finger (GATA type) family protein ... 29 4.7
At1g08000.1 68414.m00872 zinc finger (GATA type) family protein ... 29 4.7
At2g25450.1 68415.m03048 2-oxoglutarate-dependent dioxygenase, p... 28 6.2
At1g29230.1 68414.m03575 CBL-interacting protein kinase 18 (CIPK... 28 6.2
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 28 6.2
At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa... 28 8.2
At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa... 28 8.2
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 28 8.2
>At2g33260.1 68415.m04077 tryptophan/tyrosine permease family
protein contains Pfam profile PF03222:
Tryptophan/tyrosine permease family
Length = 436
Score = 31.1 bits (67), Expect = 0.88
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 334 AANCSEGSAPYRFRFSSVITAYLPWRPKTSFPQPLATQFLLVSKLSPGSGR 486
+ N S SA F FS++ T+ + + SFP+ L + LVSK S G+GR
Sbjct: 275 SVNPSALSAVQGFAFSALATSLIGYA--VSFPKQLLDTWKLVSKQSNGNGR 323
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +3
Query: 144 AGTSFCPHPMPQATSPANL*RLSPMGQARGAPPSPWQVSLPSCPPAHTKL 293
+ T+ PHP+P T P++ G R PP P + P PP L
Sbjct: 24 SSTNPSPHPLPPVTPPSSFFFFPQSGDLRRPPPPP---TPPPSPPLREAL 70
>At1g21380.1 68414.m02675 VHS domain-containing protein / GAT
domain-containing protein weak similarity to Hrs [Rattus
norvegicus] GI:8547026; contains Pfam profiles PF00790:
VHS domain, PF03127: GAT domain
Length = 506
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 168 PMPQATSPANL*RLSPM-GQARGAPPSPWQVSLP-SCPPAHTKLSCRRNLVP 317
P+PQ+ SP + P+ Q PP+PW+ P PP+ +S R N P
Sbjct: 377 PVPQSKSPEHALFTKPVYDQTEQLPPAPWETQEPRKYPPS---MSARTNKRP 425
>At4g24060.1 68417.m03456 Dof-type zinc finger domain-containing
protein Dof zinc finger protein - Oryza
sativa,PID:d1042342
Length = 342
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +3
Query: 150 TSFCPHPMPQATSPANL*RLSPMGQARGAPPSPWQVSLPSCPPAHTKLSCRRN 308
T+ CP P PQ P S G+ + P V+ P C +TK N
Sbjct: 20 TNTCPKPQPQPLQPQQ--PPSVGGERKARPEKDQAVNCPRCNSTNTKFCYYNN 70
>At1g67680.1 68414.m07723 expressed protein
Length = 664
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -3
Query: 440 ANGWGKDVFGLQGRYAVITEENRNRYGAEPSLQFAAAANQTWDQVPSARQFRVRRGTGGQ 261
A + K + L G AV ++ YGA+P AA+++Q + A++ R R+ +
Sbjct: 523 AESYEKQLKPLPGLKAVDVDKLEKTYGAKPIEGAAASSSQEEVKKEKAKRKRKRKPKYPK 582
Query: 260 GHLPGRRWSPP 228
G P PP
Sbjct: 583 GFDPANPGPPP 593
>At1g08000.2 68414.m00873 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 308
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 261 LPSCPPAHTKLSCRRNLVPSLVR-CSSELQRGFGTIP 368
L SCP ++ N++P+L + CSSE G + P
Sbjct: 67 LTSCPKGAARVRIPNNMIPALKQSCSSEALSGINSTP 103
>At1g08000.1 68414.m00872 zinc finger (GATA type) family protein
similar to PIR:T05288 from [Arabidopsis thaliana]
Length = 308
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 261 LPSCPPAHTKLSCRRNLVPSLVR-CSSELQRGFGTIP 368
L SCP ++ N++P+L + CSSE G + P
Sbjct: 67 LTSCPKGAARVRIPNNMIPALKQSCSSEALSGINSTP 103
>At2g25450.1 68415.m03048 2-oxoglutarate-dependent dioxygenase,
putative similar to 2A6 (GI:599622) and tomato ethylene
synthesis regulatory protein E8 (SP|P10967)
Length = 359
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 384 SYHRVSALETKDVLPPAVGDAVLAGVEAIPRVREADHVDV 503
+Y R S L+ D + V V AGV +PR+ HV+V
Sbjct: 4 NYDRASELKAFDEMKIGVKGLVDAGVTKVPRIFHNPHVNV 43
>At1g29230.1 68414.m03575 CBL-interacting protein kinase 18 (CIPK18)
identical to CBL-interacting protein kinase 18
[Arabidopsis thaliana] gi|14334388|gb|AAK59695
Length = 520
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -1
Query: 427 GRTSLVSRADTR**LKKIEIGMVPNPRCNSLLQRTRLGTRFRLHDSFVCAGGQEGR 260
GR+S VS +D +K++ IG +P P + + F L F GG+ R
Sbjct: 359 GRSSTVSESDAEFDVKRMGIGSMPRPSSLNAFDIISFSSGFDLSGLFEEEGGEGTR 414
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 479 DPGDSFDTSKNCVANGWGKDVFGLQGRYAVITEEN 375
D D T N W K++ GLQ ++ ++T EN
Sbjct: 68 DDNDDLGTHFNIEKGDWEKELAGLQEQFKLLTGEN 102
>At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 885
Score = 27.9 bits (59), Expect = 8.2
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Frame = -1
Query: 283 CAGGQEGRDTCQGDG---------GAPLACPIGDSRYKLAG--LVAWGIGCGQKDVPAVY 137
C GG G D D G L CP+ SR K+AG L +GC DV V
Sbjct: 334 CIGGGGGDDNADSDSDIEVVADFFGVNLRCPMSGSRIKVAGRFLPCVHMGCFDLDV-FVE 392
Query: 136 ANVARMRSW 110
N R R W
Sbjct: 393 LN-QRSRKW 400
>At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 873
Score = 27.9 bits (59), Expect = 8.2
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Frame = -1
Query: 283 CAGGQEGRDTCQGDG---------GAPLACPIGDSRYKLAG--LVAWGIGCGQKDVPAVY 137
C GG G D D G L CP+ SR K+AG L +GC DV V
Sbjct: 334 CIGGGGGDDNADSDSDIEVVADFFGVNLRCPMSGSRIKVAGRFLPCVHMGCFDLDV-FVE 392
Query: 136 ANVARMRSW 110
N R R W
Sbjct: 393 LN-QRSRKW 400
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 411 TKDVLPPAVGDAVLAGVEAIPRVREADHVD-VLGEVEGRVH 530
+++V+ P GDA++AG A P +AD + GE R H
Sbjct: 404 SRNVVLPTGGDAIIAGAAAAPEEIKADAENGEAGEARKRKH 444
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,654,510
Number of Sequences: 28952
Number of extensions: 440466
Number of successful extensions: 1564
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1562
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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