Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I19
         (773 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33080| Best HMM Match : SEP (HMM E-Value=4.48416e-44)               58   1e-08
SB_33600| Best HMM Match : UBX (HMM E-Value=4.9e-16)                   33   0.19 
SB_24564| Best HMM Match : Rad50_zn_hook (HMM E-Value=6.6)             29   3.2  

>SB_33080| Best HMM Match : SEP (HMM E-Value=4.48416e-44)
          Length = 268

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 34/86 (39%), Positives = 42/86 (48%)
 Frame = -3

Query: 540 QGVSVRVSLEDSRHEECPRHVVKPQAFAGKGHMLGSPTPPXXXXXXXXXXXXXXXXANLR 361
           +G  V V+LED RHEE      K  AFAG+G  LGSP P                     
Sbjct: 180 RGGEVHVNLEDHRHEEYVPQKKKMTAFAGEGRKLGSPVPEVKFNEEKKRATAA-----AN 234

Query: 360 AAQSAVTLDETQPVTTLQFRLADGTR 283
            A     +D++QP T++Q RLADGTR
Sbjct: 235 QAPKPFNIDQSQPTTSIQIRLADGTR 260



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 628 GPXRXYSDPENAEFLSCIRRGEIP 557
           G  R + DPEN +FL+ +++GEIP
Sbjct: 149 GELRSFDDPENEDFLASVKKGEIP 172


>SB_33600| Best HMM Match : UBX (HMM E-Value=4.9e-16)
          Length = 73

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -3

Query: 306 FRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFP 172
           FRL +G  +TG F  + T+ A+  +V +      + PF+L+T+FP
Sbjct: 1   FRLTNGATMTGSFQATDTLSAVVAYV-QGNRTDGIAPFALMTSFP 44


>SB_24564| Best HMM Match : Rad50_zn_hook (HMM E-Value=6.6)
          Length = 263

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 184 QQTEWPQLVRRLRSRHELPQRADRVAVVEPARDAGAVGQSEL 309
           ++ EW Q V R RSR  +P R + VA  E   +   VG+ EL
Sbjct: 193 RRAEWAQTVHRARSR-SIPARVESVA-AEGGAETLVVGKQEL 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,988,390
Number of Sequences: 59808
Number of extensions: 245451
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)