Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_I19
(773 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024876-10|AAP31418.1| 193|Caenorhabditis elegans Hypothetical... 57 2e-08
AC024876-9|AAF60887.2| 301|Caenorhabditis elegans Hypothetical ... 57 2e-08
AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical ... 33 0.23
Z82268-7|CAB05196.2| 138|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear recep... 29 2.8
AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormo... 29 2.8
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 29 2.8
AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormo... 29 2.8
Z83235-7|CAD57703.1| 486|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z83235-6|CAD57702.1| 501|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z83235-5|CAD21653.1| 476|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z83235-4|CAB05772.1| 477|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 28 8.5
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 28 8.5
AF332206-1|AAK17977.1| 381|Caenorhabditis elegans nuclear recep... 28 8.5
AF273795-1|AAG15143.1| 475|Caenorhabditis elegans nuclear recep... 28 8.5
AF273793-1|AAG15141.1| 474|Caenorhabditis elegans nuclear recep... 28 8.5
>AC024876-10|AAP31418.1| 193|Caenorhabditis elegans Hypothetical
protein Y94H6A.9b protein.
Length = 193
Score = 56.8 bits (131), Expect = 2e-08
Identities = 24/65 (36%), Positives = 38/65 (58%)
Frame = -3
Query: 366 LRAAQSAVTLDETQPVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSL 187
L A+ ++ + +P T +Q RL + R+ G FNHSHT+ A+R F+ A P PF +
Sbjct: 99 LEDAKKELSTNMNEPTTNIQIRLPNNQRLVGIFNHSHTLEAVRTFICTARPDMIYAPFQM 158
Query: 186 LTAFP 172
+ A+P
Sbjct: 159 MAAYP 163
>AC024876-9|AAF60887.2| 301|Caenorhabditis elegans Hypothetical
protein Y94H6A.9a protein.
Length = 301
Score = 56.8 bits (131), Expect = 2e-08
Identities = 24/65 (36%), Positives = 38/65 (58%)
Frame = -3
Query: 366 LRAAQSAVTLDETQPVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSL 187
L A+ ++ + +P T +Q RL + R+ G FNHSHT+ A+R F+ A P PF +
Sbjct: 207 LEDAKKELSTNMNEPTTNIQIRLPNNQRLVGIFNHSHTLEAVRTFICTARPDMIYAPFQM 266
Query: 186 LTAFP 172
+ A+P
Sbjct: 267 MAAYP 271
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 628 GPXRXYSDPENAEFLSCIRRGEIP 557
GP DP EFL + +GEIP
Sbjct: 106 GPLMSRQDPRTIEFLESVGKGEIP 129
>AF106583-7|AAD03130.1| 299|Caenorhabditis elegans Hypothetical
protein F23C8.4 protein.
Length = 299
Score = 33.1 bits (72), Expect = 0.23
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -3
Query: 318 TTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFP 172
TTLQFRL DG + +F + + +R +V A + PF+L+T FP
Sbjct: 223 TTLQFRLLDGQTVRQQFEANEPLAMVRAWV-ETNHANGV-PFTLMTPFP 269
>Z82268-7|CAB05196.2| 138|Caenorhabditis elegans Hypothetical
protein F52B11.6 protein.
Length = 138
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 78 LLVSLLEPLHDRRVEQVRLRQGSRRRHPAPRSGRPSAD*MAAAGTPAPLATRTPS 242
L+++LL L ++ + R+ + RH + + + A TPAP T+ PS
Sbjct: 7 LIIALLLTLFISGIDSLPFRKHNNHRHLKNQKAQQLKEEATEAPTPAPTTTKAPS 61
>AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear receptor
NHR-88 protein.
Length = 598
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 31 YKSKSILYKTVLIQQNYWCRYLSRCMTVELSRFACARXR 147
Y K +T+ QQ Y CR+ +C + R AC R
Sbjct: 59 YGCKGFFRRTIRSQQTYTCRFTQKCAIDKDQRNACRYCR 97
>AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform c protein.
Length = 235
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 31 YKSKSILYKTVLIQQNYWCRYLSRCMTVELSRFACARXR 147
Y K +T+ QQ Y CR+ +C + R AC R
Sbjct: 54 YGCKGFFRRTIRSQQTYTCRFTQKCAIDKDQRNACRYCR 92
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 31 YKSKSILYKTVLIQQNYWCRYLSRCMTVELSRFACARXR 147
Y K +T+ QQ Y CR+ +C + R AC R
Sbjct: 54 YGCKGFFRRTIRSQQTYTCRFTQKCAIDKDQRNACRYCR 92
>AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform a protein.
Length = 593
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 31 YKSKSILYKTVLIQQNYWCRYLSRCMTVELSRFACARXR 147
Y K +T+ QQ Y CR+ +C + R AC R
Sbjct: 54 YGCKGFFRRTIRSQQTYTCRFTQKCAIDKDQRNACRYCR 92
>Z83235-7|CAD57703.1| 486|Caenorhabditis elegans Hypothetical
protein K10C3.6d protein.
Length = 486
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 40 KSILYKTVLIQQNYWCRYLSRCMTVELSRFACARXR 147
K +TVL Q + CR+ RC+ + R AC R
Sbjct: 41 KGFFRRTVLRDQKFTCRFNKRCVIDKNFRCACRYCR 76
>Z83235-6|CAD57702.1| 501|Caenorhabditis elegans Hypothetical
protein K10C3.6c protein.
Length = 501
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 40 KSILYKTVLIQQNYWCRYLSRCMTVELSRFACARXR 147
K +TVL Q + CR+ RC+ + R AC R
Sbjct: 56 KGFFRRTVLRDQKFTCRFNKRCVIDKNFRCACRYCR 91
>Z83235-5|CAD21653.1| 476|Caenorhabditis elegans Hypothetical
protein K10C3.6b protein.
Length = 476
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 40 KSILYKTVLIQQNYWCRYLSRCMTVELSRFACARXR 147
K +TVL Q + CR+ RC+ + R AC R
Sbjct: 32 KGFFRRTVLRDQKFTCRFNKRCVIDKNFRCACRYCR 67
>Z83235-4|CAB05772.1| 477|Caenorhabditis elegans Hypothetical
protein K10C3.6a protein.
Length = 477
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 40 KSILYKTVLIQQNYWCRYLSRCMTVELSRFACARXR 147
K +TVL Q + CR+ RC+ + R AC R
Sbjct: 32 KGFFRRTVLRDQKFTCRFNKRCVIDKNFRCACRYCR 67
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 193 EWPQLVRRLRSRHELPQRADRVAVVEPARDAGAVGQSELQRSDGLRFVECDGALCGAE 366
EW +L + +E+ RA+ VAV + +DA Q+ +R +C A C ++
Sbjct: 1486 EWKKLSEEQKKHYEM--RAEVVAVEKAKQDAIKASQAMTLLPGQVRIYQCKWAACDSQ 1541
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 193 EWPQLVRRLRSRHELPQRADRVAVVEPARDAGAVGQSELQRSDGLRFVECDGALCGAE 366
EW +L + +E+ RA+ VAV + +DA Q+ +R +C A C ++
Sbjct: 1486 EWKKLSEEQKKHYEM--RAEVVAVEKAKQDAIKASQAMTLLPGQVRIYQCKWAACDSQ 1541
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 193 EWPQLVRRLRSRHELPQRADRVAVVEPARDAGAVGQSELQRSDGLRFVECDGALCGAE 366
EW +L + +E+ RA+ VAV + +DA Q+ +R +C A C ++
Sbjct: 116 EWKKLSEEQKKHYEM--RAEVVAVEKAKQDAIKASQAMTLLPGQVRIYQCKWAACDSQ 171
>AF332206-1|AAK17977.1| 381|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 381
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 40 KSILYKTVLIQQNYWCRYLSRCMTVELSRFACARXR 147
K +TVL Q + CR+ RC+ + R AC R
Sbjct: 26 KGFFRRTVLRDQKFTCRFNKRCVIDKNFRCACRYCR 61
>AF273795-1|AAG15143.1| 475|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 475
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 40 KSILYKTVLIQQNYWCRYLSRCMTVELSRFACARXR 147
K +TVL Q + CR+ RC+ + R AC R
Sbjct: 31 KGFFRRTVLRDQKFTCRFNKRCVIDKNFRCACRYCR 66
>AF273793-1|AAG15141.1| 474|Caenorhabditis elegans nuclear receptor
NHR-49 protein.
Length = 474
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 40 KSILYKTVLIQQNYWCRYLSRCMTVELSRFACARXR 147
K +TVL Q + CR+ RC+ + R AC R
Sbjct: 29 KGFFRRTVLRDQKFTCRFNKRCVIDKNFRCACRYCR 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,204,860
Number of Sequences: 27780
Number of extensions: 172455
Number of successful extensions: 552
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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