Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I19
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04210.1 68417.m00597 UBX domain-containing protein similar t...    66   2e-11
At4g22150.1 68417.m03201 UBX domain-containing protein similar t...    55   6e-08
At4g15410.1 68417.m02355 UBX domain-containing protein low simil...    52   3e-07
At3g21660.1 68416.m02731 UBX domain-containing protein contains ...    43   3e-04
At1g22050.1 68414.m02758 ubiquitin family protein contains INTER...    30   1.5  

>At4g04210.1 68417.m00597 UBX domain-containing protein similar to
           XY40 protein [Rattus norvegicus] GI:2547025; contains
           Pfam profile PF00789: UBX domain
          Length = 303

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 34/111 (30%), Positives = 48/111 (43%)
 Frame = -3

Query: 504 RHEECPRHVVKPQAFAGKGHMLGSPTPPXXXXXXXXXXXXXXXXANLRAAQSAVTLDETQ 325
           + E+CP    +  +F G G  LG                         A   ++ +DET 
Sbjct: 168 KEEKCPERQKRRVSFQGVGRTLGGSNEGSGSSSPVAPDSAPIPIQTEPAPSQSLVIDETV 227

Query: 324 PVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFP 172
           P T++Q RLADGTR+  +FNH HTV  +R F+  + P   L        FP
Sbjct: 228 PTTSIQLRLADGTRLVAKFNHHHTVNDIRGFIDSSRPGASLNYQLQTMGFP 278



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -2

Query: 628 GPXRXYSDPENAEFLSCIRRGEIP 557
           GP R   DPENA FL  IR+ E P
Sbjct: 126 GPLRKLDDPENASFLESIRKSECP 149


>At4g22150.1 68417.m03201 UBX domain-containing protein similar to
           XY40 protein [Rattus norvegicus] GI:2547025; contains
           Pfam profile PF00789: UBX domain
          Length = 302

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 30/97 (30%), Positives = 47/97 (48%)
 Frame = -3

Query: 504 RHEECPRHVVKPQAFAGKGHMLGSPTPPXXXXXXXXXXXXXXXXANLRAAQSAVTLDETQ 325
           R E+CP       +F G G  LG  +                    +++   ++ +DET 
Sbjct: 172 RDEKCPEKEKLKVSFQGVGRTLGGASSSTASSQSNLTDVAA-----VQSPLQSLVVDETL 226

Query: 324 PVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEP 214
           P T++Q RLADGTR+  +FN+ HTV  +R F+  + P
Sbjct: 227 PSTSIQLRLADGTRMVAKFNNHHTVNDIRGFIEFSRP 263



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -2

Query: 628 GPXRXYSDPENAEFLSCIRRGEIP 557
           GP R   DPENA FL  IR+ E P
Sbjct: 130 GPLRKLDDPENASFLDSIRKSECP 153


>At4g15410.1 68417.m02355 UBX domain-containing protein low
           similarity to XY40 protein [Rattus norvegicus]
           GI:2547025; contains Pfam profile PF00789: UBX domain
          Length = 421

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = -3

Query: 360 AAQSAVTLDETQPVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLT 181
           A    + +D   P T++Q RLADGTR+  RFN+ HTV  +R F+  + P    + + LLT
Sbjct: 334 APSRGLVVDPAAPTTSIQLRLADGTRLVSRFNNHHTVRDVRGFIDASRPGGS-KEYQLLT 392

Query: 180 -AFP 172
             FP
Sbjct: 393 MGFP 396



 Score = 35.1 bits (77), Expect = 0.052
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -2

Query: 628 GPXRXYSDPENAEFLSCIRRGEIP 557
           GP R +SDPENA F++ I R E P
Sbjct: 248 GPLRGFSDPENAAFMNSISRSECP 271


>At3g21660.1 68416.m02731 UBX domain-containing protein contains
           Pfam profile: PF00789 UBX domain
          Length = 435

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = -3

Query: 357 AQSAVTLDETQPVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEP 214
           + S++ +D   P T++Q  LAD TRI  +FN  HT+  +R F+  + P
Sbjct: 349 SMSSLVVDPAAPTTSIQLILADSTRIVTQFNTHHTIRDIRCFIDTSRP 396


>At1g22050.1 68414.m02758 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 119

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -3

Query: 312 LQFRLADGTRI-TGRFNHSHTVGALRE 235
           L+FRLADGT I   ++N S TV +L+E
Sbjct: 10  LKFRLADGTDIGPSKYNQSMTVSSLKE 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,694,316
Number of Sequences: 28952
Number of extensions: 157144
Number of successful extensions: 445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)