Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I18
         (863 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29033.1 68416.m03629 glycine-rich protein                          30   1.7  
At2g05510.1 68415.m00583 glycine-rich protein                          29   3.0  
At1g15840.1 68414.m01901 expressed protein                             29   4.0  
At4g40042.1 68417.m05669 expressed protein                             29   5.3  
At4g22450.1 68417.m03243 hypothetical protein                          28   7.0  
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei...    28   9.2  
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei...    28   9.2  
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri...    28   9.2  
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g...    28   9.2  
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ...    28   9.2  

>At3g29033.1 68416.m03629 glycine-rich protein 
          Length = 167

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 445 GFQNRQYDGYQ-NRHANRTGGDGYYGNGDVSEGAH 344
           G+Q    DGYQ N   N  G  GY G G+V+ G +
Sbjct: 95  GYQADYADGYQGNLAGNPPGSGGYQGIGNVNSGGY 129


>At2g05510.1 68415.m00583 glycine-rich protein 
          Length = 127

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -2

Query: 526 ALSLIVKAVTAIGADKVVITKTDRTREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGA 347
           A+ L+V  V+A     +V  +++ T       Q +GY   H    GG G+YG G    G 
Sbjct: 13  AILLVVSEVSAARQSGMVKPESEATV------QPEGYHGGHGGH-GGGGHYGGGGHGHGG 65

Query: 346 HH 341
           H+
Sbjct: 66  HN 67


>At1g15840.1 68414.m01901 expressed protein
          Length = 126

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/52 (36%), Positives = 21/52 (40%)
 Frame = -2

Query: 391 GGDGYYGNGDVSEGAHHAXXXXXXXXXXXGFQGGYKGRSRGAPRGATRGASR 236
           GGDG  G GD   G  H            G +GG + R  G  RG  RG  R
Sbjct: 57  GGDGTKGGGDGISGGGHGDGLGCSGGGGDGTKGGGR-RGDGLGRGLGRGGGR 107


>At4g40042.1 68417.m05669 expressed protein
          Length = 155

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 374 IISVATGTVRMPILV---AVILSVLKSFPGSICFGNHHL 481
           ++   T + RM +L+    V+L+ L + P   CF  HHL
Sbjct: 88  VVGYTTASFRMMMLIYAGGVVLTTLITIPNWPCFNRHHL 126


>At4g22450.1 68417.m03243 hypothetical protein 
          Length = 457

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 433 RQYDGYQNRHANRTGGDGYYGNGDV 359
           +QY+G++    NRT G GYY NG +
Sbjct: 72  KQYEGFKKLTHNRT-GLGYYPNGSI 95


>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/55 (32%), Positives = 21/55 (38%)
 Frame = -2

Query: 391 GGDGYYGNGDVSEGAHHAXXXXXXXXXXXGFQGGYKGRSRGAPRGATRGASRPPR 227
           GG G YG GD   G   A              GG +G +RG   G  +G  R  R
Sbjct: 24  GGGGGYGGGDAGYGGRGASGGGSYGGRGGYGGGGGRG-NRGGGGGGYQGGDRGGR 77


>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/55 (32%), Positives = 21/55 (38%)
 Frame = -2

Query: 391 GGDGYYGNGDVSEGAHHAXXXXXXXXXXXGFQGGYKGRSRGAPRGATRGASRPPR 227
           GG G YG GD   G   A              GG +G +RG   G  +G  R  R
Sbjct: 24  GGGGGYGGGDAGYGGRGASGGGSYGGRGGYGGGGGRG-NRGGGGGGYQGGDRGGR 77


>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
           fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
          Length = 320

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 292 GYKGRSRGAPRGATRGASRP 233
           G +GR RG PRG  RG   P
Sbjct: 49  GGRGRGRGPPRGGARGGRGP 68


>At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-glucan
            synthase, putative similar to callose synthase 1
            catalytic subunit GI:13649388 from [Arabidopsis thaliana]
          Length = 1768

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 327  VSGMEKATASREDTRDAVEELLEEQHAVRLGL 232
            +SG+EK    R  + +A+  +L +Q  ++LGL
Sbjct: 1368 LSGVEKIAKDRSSSNEALGAILNQQFIIQLGL 1399


>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 358

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
 Frame = -2

Query: 445 GFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAHHAXXXXXXXXXXXGFQGGYKGR-SRG 269
           G++N    GY +R      G G  G G   EGA+                 GY G    G
Sbjct: 271 GYRNEPPLGYSSRFGPYGSGFGGEGYGRGGEGAYLGYPRGGGEGYGGYGGPGYGGAYESG 330

Query: 268 APRGATRGASRP 233
            P G+  GA  P
Sbjct: 331 GPGGSYEGAGGP 342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,109,487
Number of Sequences: 28952
Number of extensions: 266974
Number of successful extensions: 869
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)