Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I14
         (818 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21190| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   6e-07
SB_6496| Best HMM Match : Collagen (HMM E-Value=0)                     33   0.28 
SB_7264| Best HMM Match : Ribosomal_L44 (HMM E-Value=3.3)              32   0.64 
SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.64 
SB_34718| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12)                26   2.0  
SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    30   2.6  
SB_41947| Best HMM Match : SH3_1 (HMM E-Value=6.3e-24)                 30   2.6  
SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32)                     29   3.4  
SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0)                 29   3.4  
SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37)                    29   6.0  
SB_26644| Best HMM Match : Collagen (HMM E-Value=0)                    29   6.0  
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              29   6.0  
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_23422| Best HMM Match : Propeptide_C1 (HMM E-Value=7.2)             28   7.9  

>SB_21190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 25/66 (37%), Positives = 36/66 (54%)
 Frame = -1

Query: 548 LRDMCSRHSGLEPLTPWMIDLLAHHCIMNNPQRQALPINVAFRRALSLMAGGLFLPGCAG 369
           +RD+C R     PL  W ++LL    + ++   Q L    AFRR +  ++ G+FL G  G
Sbjct: 518 MRDLCERVPTFAPLNKWALELLVEKTLSSS--EQPLGPGEAFRRIMECISSGIFLEGGPG 575

Query: 368 LPDPCE 351
           L DPCE
Sbjct: 576 LNDPCE 581


>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1234

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
 Frame = -3

Query: 447 GLTHQRGIPPRVVSDGGRVVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASR 268
           G+T  RG  P +V D G+   AG  GA G +RG   P                  +   R
Sbjct: 194 GMTGDRG-KPGLVGDPGKKGMAGRAGAMG-MRGLPGPPGRRGKRGDPGSDGIPG-ERGDR 250

Query: 267 G--GARGSPVRPGSPALRGRQGHILGDHGV-GRRGGL 166
           G  G +G P + GSP L+G +G   G  G  GR+G +
Sbjct: 251 GILGVQGEPGKDGSPGLKGTRG-TRGKRGERGRKGDM 286


>SB_7264| Best HMM Match : Ribosomal_L44 (HMM E-Value=3.3)
          Length = 152

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -1

Query: 206 ISLEITVWDGVVVSPLAPAY---NDSPEPMDTDDKEEESQDSVAA 81
           I  E++ W+GV+V+P   AY      PE     D+ ++ QD  AA
Sbjct: 96  IETEVSSWNGVIVTPGTKAYEKQEGKPEEEGDGDENDDEQDVEAA 140


>SB_17315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
 Frame = -3

Query: 393 VVPAGLRGAAGPVRGGALPXXXXXXXXXXXXXXXXXTDVASRGGARGSPVRPGSPALRGR 214
           V+ +G  GAAGP +G A P                 +      G +G P +PG P  RG+
Sbjct: 210 VIMSGDLGAAGP-QGEAGPTGATFIMAFVFQGNVGKSGSKGESGDKGQPGKPGKPGSRGQ 268

Query: 213 QG-----HILGDHGV 184
            G      ++GD GV
Sbjct: 269 AGPAGKRGMIGDRGV 283


>SB_34718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 350 PRTGPAAPRSPAGTTRPPSETTRGGMP 430
           P T P++ R P+  TRPPS +T   +P
Sbjct: 13  PVTAPSSTRPPSPNTRPPSPSTTATLP 39


>SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12)
          Length = 299

 Score = 25.8 bits (54), Expect(2) = 2.0
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 264 GARGSPVRPGSPALRGRQGHILGDHGV-GRRG 172
           G RG    PG P   G+QG I G  G+ G RG
Sbjct: 155 GRRGPAGPPGQPGADGKQG-IRGPPGIKGERG 185



 Score = 23.0 bits (47), Expect(2) = 2.0
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 423 PPRVVSDGGRVVPAGLRGAAGP 358
           PP    D GR    G RG AGP
Sbjct: 141 PPGPKGDKGRPGKRGRRGPAGP 162


>SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 588 NAHHSSIKVLIRLSPGHVFSALRTRTPDAVDDRSARAPLHHEQPSAS-GLTHQRGI 424
           N H   I    R  P +  +  R+R   A    SAR P  H QP  + G TH+R I
Sbjct: 155 NTHRREITAATRTGPDNRGNT-RSRQATAATRSSARQPRQHAQPPDNRGNTHRRQI 209


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
 Frame = -3

Query: 462 QPSASGLTHQRGIPPRVVSDGGRVVPA--GLRGAAGPVRGGALPXXXXXXXXXXXXXXXX 289
           +P  +G   QRG   R+ S GG   P   G+ G +GP      P                
Sbjct: 628 RPGITGTLGQRG---RLGSKGGEGTPGSQGMPGMSGP------PGRPGPPGPPGPPGPSG 678

Query: 288 XTDVASRGGARGSPVRPGSPALRGRQGHILGDHG----VGRRG 172
            +    R G +G+P R G P + G  G   G+ G    +GR+G
Sbjct: 679 PSGSNGRNGVKGTPGRDGEPGIPGPDGR-PGERGPGGEIGRKG 720


>SB_41947| Best HMM Match : SH3_1 (HMM E-Value=6.3e-24)
          Length = 581

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 473 SGARADLSSTASGVRVRSAENTCPGERRINTL 568
           SGA  DLS T   +++ SA   CP   R+  L
Sbjct: 59  SGASPDLSKTELAIKLASASPRCPARLRVRVL 90


>SB_5177| Best HMM Match : C4 (HMM E-Value=1.4e-32)
          Length = 176

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 258 RGSPVRPGSPALRGRQGHILGDHGVGRRGGLP 163
           RG P +PG P  +G++G + GD GV  + G P
Sbjct: 23  RGPPGKPGLPGNKGKEG-LPGDDGVPGQPGPP 53


>SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0)
          Length = 304

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/36 (44%), Positives = 16/36 (44%)
 Frame = -3

Query: 276 ASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGG 169
           A RGG RG P   G    RG  G      G GR GG
Sbjct: 42  AGRGGGRGGPRGGGRGGGRGGGGGFKSPRGGGRGGG 77


>SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 482 RADLSSTASGVRVRSAENTCPGERRINTLIDE 577
           R+DL  TA G+ VR     CPG  RI+ L+++
Sbjct: 373 RSDLQITAGGILVRMNPRLCPG--RIDPLVND 402


>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
 Frame = -1

Query: 257 GGHLYVLGLQPFEG------GKDISLEITVWDGVVVSPLAPAYNDSPEPMDTDDKEEESQ 96
           GG+ Y + ++P  G      G D+  E T W G    P+A   N +P P+D   K  +  
Sbjct: 29  GGYKYEVEVEPLSGSERDQVGDDLPQEGT-WTGFQSDPVAVLGNAAPTPVDLLGKCHDEL 87

Query: 95  DSVAA*DLT*EIT 57
           D     D +  IT
Sbjct: 88  DLAILLDASYSIT 100


>SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37)
          Length = 912

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = -1

Query: 236 GLQPFEGGKDISLEIT------VWDGVVVSPLAPAYNDSPEPMDTDDKEEESQDSV 87
           GLQ F+GG+  ++++       + +  + SP     +D+P   D D  EE+ Q+S+
Sbjct: 86  GLQEFDGGQTHTIQVAESALAPIQEVAIASPENSNRSDTPIQGDCDIHEEQDQESL 141


>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 877

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 32/106 (30%), Positives = 35/106 (33%), Gaps = 5/106 (4%)
 Frame = -3

Query: 447 GLTHQRGIPPRVVSDGGRVVPAGLRGAAG-PVRGGALPXXXXXXXXXXXXXXXXXTDVAS 271
           G   QRG    V    G   P GL+GAAG P   G                         
Sbjct: 526 GANGQRG----VTGPSGSPGPGGLQGAAGMPGPAGPKGDRGSPGVSGASGAKGAKGHEGG 581

Query: 270 RG--GARGSPVRPGSPALRGRQG--HILGDHGVGRRGGLPASARLQ 145
           RG  G RG     G P  RG+QG     G  G+    GL     LQ
Sbjct: 582 RGKRGQRGETGEQGLPGARGKQGANGPRGPRGIKGASGLQGGPGLQ 627


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 203  SLEITVWDGVVVSPLAPAYNDSPEPMDT 120
            SL   + +GV+V+PL P+  D+P+P  T
Sbjct: 2366 SLATALSEGVIVTPLQPSPPDTPKPKRT 2393


>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = -3

Query: 423 PPRVVSDGGRVVPAGLRGAAGPV-RGGALPXXXXXXXXXXXXXXXXXTDVASRG--GARG 253
           PP  + D G++ P G +G  GP    G +                   D  + G  GARG
Sbjct: 541 PPGQIGDPGKMGPQGFKGDPGPPGPPGEVGVPGAPGMKGPIGKPGPVGDAGAPGEKGARG 600

Query: 252 SPVRPGSPALRGRQG 208
             ++ G+P + G++G
Sbjct: 601 LSIQ-GTPGMDGKRG 614


>SB_23422| Best HMM Match : Propeptide_C1 (HMM E-Value=7.2)
          Length = 628

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -1

Query: 272 RVVARGGHLYVLGLQPFEGGKDISLEITVWDGVVVSPLAPAYNDSPEPMDTDDKEEESQD 93
           R + R  HL V+G + FE G+ I+  +       +SP AP Y+ + +   T D   +  D
Sbjct: 313 RALGRFKHLLVIGFEGFEIGRHITGNVVDDHQAYLSPSAP-YSRTRKTRQTRDLFADQTD 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,637,808
Number of Sequences: 59808
Number of extensions: 355379
Number of successful extensions: 1430
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)