Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I14
         (818 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33190.1 68415.m04066 F-box family protein contains F-box dom...    31   0.92 
At1g35663.1 68414.m04433 hypothetical protein                          31   1.2  
At5g08550.1 68418.m01017 expressed protein                             29   4.9  
At5g03370.1 68418.m00290 acylphosphatase family contains Pfam PF...    28   8.6  
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila...    28   8.6  
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi...    28   8.6  
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative            28   8.6  
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila...    28   8.6  

>At2g33190.1 68415.m04066 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 379

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 277 CFAWWRAGVTCTSWVSSPSRAARTYPWR 194
           C  + RAG  C++W  + SR+   YPWR
Sbjct: 25  CLDFHRAGTVCSNWY-AVSRSCPLYPWR 51


>At1g35663.1 68414.m04433 hypothetical protein
          Length = 106

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 447 LTLRVVHDAVVREQIYHPRRQGFESGVPRTHVPEKD 554
           +TL  VH  +  ++ Y P  +GF   +  THVP KD
Sbjct: 14  MTLTKVHPKLRSDRRYWPHFKGFIGAMDGTHVPAKD 49


>At5g08550.1 68418.m01017 expressed protein
          Length = 908

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 342 VRRLARVRQPRAARQEQPARHQRQRAAECHVDG*GLTL 455
           +++   V Q  AARQ++ AR + +RA+   VDG  L +
Sbjct: 520 LQKRREVEQRAAARQKRRARFENKRASAMEVDGPSLKI 557


>At5g03370.1 68418.m00290 acylphosphatase family contains Pfam
           PF00708: Acylphosphatase
          Length = 171

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 639 VISSHLAAIRHSRWFEENAHHSSIKVLIRLSPGHVFSALRTRTPDAVDDRSAR 481
           VI   +  + +  W  ENA    IK  +R        AL +  P+AVD+   R
Sbjct: 87  VIKGRVQGVCYRNWTVENAEQLGIKGWVRNRRDGSVEALFSGPPEAVDEMHQR 139


>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
           to ribosomal protein S2 GI:430711 from [Drosophila
           melanogaster]
          Length = 284

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -3

Query: 276 ASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGG 169
           A RGG RG   R       G +G   G  G GRRGG
Sbjct: 10  AERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGG 45


>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
           to ribosomal protein S2 GI:939717 from [Urechis caupo]
          Length = 284

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -3

Query: 276 ASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGG 169
           A RGG RG   R       G +G   G  G GRRGG
Sbjct: 10  AERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGG 45


>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 
          Length = 284

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -3

Query: 276 ASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGG 169
           A RGG RG   R       G +G   G  G GRRGG
Sbjct: 10  AERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGG 45


>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
           to ribosomal protein S2 GI:939717 from (Urechis caupo)
          Length = 284

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -3

Query: 276 ASRGGARGSPVRPGSPALRGRQGHILGDHGVGRRGG 169
           A RGG RG   R       G +G   G  G GRRGG
Sbjct: 10  AERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGG 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,692,304
Number of Sequences: 28952
Number of extensions: 231862
Number of successful extensions: 839
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)