Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_I11
(813 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 240 7e-64
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 240 7e-64
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 240 9e-64
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 240 9e-64
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 240 9e-64
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 233 8e-62
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 138 3e-33
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 81 1e-15
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 79 5e-15
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 78 6e-15
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 78 6e-15
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 78 6e-15
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 78 6e-15
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 76 2e-14
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 76 3e-14
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 76 3e-14
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 47 1e-05
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 44 9e-05
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 33 0.30
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03... 30 1.6
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ... 29 4.9
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 28 6.4
At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase... 28 6.4
At3g26855.1 68416.m03360 hypothetical protein 28 8.5
At2g46530.2 68415.m05803 transcriptional factor B3 family protei... 28 8.5
At2g46530.1 68415.m05802 transcriptional factor B3 family protei... 28 8.5
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 240 bits (588), Expect = 7e-64
Identities = 108/124 (87%), Positives = 116/124 (93%), Gaps = 2/124 (1%)
Frame = -3
Query: 499 CCT--RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 326
CC RGDVVPKDVNAA+ TIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRA
Sbjct: 315 CCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA 374
Query: 325 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 146
VCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE
Sbjct: 375 VCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Query: 145 VGMD 134
VG +
Sbjct: 435 VGAE 438
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/38 (84%), Positives = 33/38 (86%)
Frame = -1
Query: 666 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 553
YPRIHF L +YAPVISA KAYHEQLSV EITNA FEPA
Sbjct: 262 YPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPA 299
Score = 53.6 bits (123), Expect = 1e-07
Identities = 33/98 (33%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Frame = -2
Query: 779 PTYTNLXXXXXXXXXXXXX*XRRRSEL--DLTEXQXNLVXTPVSTSHWSRTRQSSLPRRP 606
PTYTNL R + D+TE Q NLV P S +
Sbjct: 222 PTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKA 281
Query: 605 TMNSFPSPRSQTHASSPPNQMVKCDPRHGKYMACCMLY 492
P P + M KCDPRHGKYMACC++Y
Sbjct: 282 YHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMY 319
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 240 bits (588), Expect = 7e-64
Identities = 108/124 (87%), Positives = 116/124 (93%), Gaps = 2/124 (1%)
Frame = -3
Query: 499 CCT--RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 326
CC RGDVVPKDVNAA+ TIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLAKVQRA
Sbjct: 315 CCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA 374
Query: 325 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 146
VCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE
Sbjct: 375 VCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Query: 145 VGMD 134
VG +
Sbjct: 435 VGAE 438
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/38 (84%), Positives = 33/38 (86%)
Frame = -1
Query: 666 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 553
YPRIHF L +YAPVISA KAYHEQLSV EITNA FEPA
Sbjct: 262 YPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPA 299
Score = 53.6 bits (123), Expect = 1e-07
Identities = 33/98 (33%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Frame = -2
Query: 779 PTYTNLXXXXXXXXXXXXX*XRRRSEL--DLTEXQXNLVXTPVSTSHWSRTRQSSLPRRP 606
PTYTNL R + D+TE Q NLV P S +
Sbjct: 222 PTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKA 281
Query: 605 TMNSFPSPRSQTHASSPPNQMVKCDPRHGKYMACCMLY 492
P P + M KCDPRHGKYMACC++Y
Sbjct: 282 YHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMY 319
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 240 bits (587), Expect = 9e-64
Identities = 108/124 (87%), Positives = 117/124 (94%), Gaps = 2/124 (1%)
Frame = -3
Query: 499 CCT--RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 326
CC RGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRA
Sbjct: 315 CCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA 374
Query: 325 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 146
VCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE
Sbjct: 375 VCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Query: 145 VGMD 134
VG +
Sbjct: 435 VGAE 438
Score = 70.9 bits (166), Expect = 9e-13
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = -1
Query: 666 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 553
YPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA
Sbjct: 262 YPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPA 299
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/98 (34%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Frame = -2
Query: 779 PTYTNLXXXXXXXXXXXXX*XRRRSEL--DLTEXQXNLVXTPVSTSHWSRTRQSSLPRRP 606
PTYTNL R L D+TE Q NLV P S +
Sbjct: 222 PTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 281
Query: 605 TMNSFPSPRSQTHASSPPNQMVKCDPRHGKYMACCMLY 492
A P + M KCDPRHGKYMACC++Y
Sbjct: 282 FHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMY 319
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 240 bits (587), Expect = 9e-64
Identities = 108/124 (87%), Positives = 117/124 (94%), Gaps = 2/124 (1%)
Frame = -3
Query: 499 CCT--RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 326
CC RGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRA
Sbjct: 315 CCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA 374
Query: 325 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 146
VCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE
Sbjct: 375 VCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Query: 145 VGMD 134
VG +
Sbjct: 435 VGAE 438
Score = 70.9 bits (166), Expect = 9e-13
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = -1
Query: 666 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 553
YPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA
Sbjct: 262 YPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPA 299
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/98 (34%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Frame = -2
Query: 779 PTYTNLXXXXXXXXXXXXX*XRRRSEL--DLTEXQXNLVXTPVSTSHWSRTRQSSLPRRP 606
PTYTNL R L D+TE Q NLV P S +
Sbjct: 222 PTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 281
Query: 605 TMNSFPSPRSQTHASSPPNQMVKCDPRHGKYMACCMLY 492
A P + M KCDPRHGKYMACC++Y
Sbjct: 282 FHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMY 319
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 240 bits (587), Expect = 9e-64
Identities = 108/124 (87%), Positives = 117/124 (94%), Gaps = 2/124 (1%)
Frame = -3
Query: 499 CCT--RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 326
CC RGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRA
Sbjct: 315 CCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA 374
Query: 325 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 146
VCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE
Sbjct: 375 VCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Query: 145 VGMD 134
VG +
Sbjct: 435 VGAE 438
Score = 70.9 bits (166), Expect = 9e-13
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = -1
Query: 666 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 553
YPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA
Sbjct: 262 YPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPA 299
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/98 (34%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Frame = -2
Query: 779 PTYTNLXXXXXXXXXXXXX*XRRRSEL--DLTEXQXNLVXTPVSTSHWSRTRQSSLPRRP 606
PTYTNL R L D+TE Q NLV P S +
Sbjct: 222 PTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 281
Query: 605 TMNSFPSPRSQTHASSPPNQMVKCDPRHGKYMACCMLY 492
A P + M KCDPRHGKYMACC++Y
Sbjct: 282 FHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMY 319
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 233 bits (571), Expect = 8e-62
Identities = 105/122 (86%), Positives = 113/122 (92%), Gaps = 2/122 (1%)
Frame = -3
Query: 499 CCT--RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 326
CC RGDVVPKDVN A+A IK KRTIQFVDWCPTGFK GINYQPP+VVPGGDLAKVQRA
Sbjct: 315 CCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRA 374
Query: 325 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 146
VCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE
Sbjct: 375 VCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
Query: 145 VG 140
VG
Sbjct: 435 VG 436
Score = 61.3 bits (142), Expect = 7e-10
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = -1
Query: 666 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 553
YPRIHF L +YAPVIS+ KAYHEQ SV EIT + FEP+
Sbjct: 262 YPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPS 299
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/70 (41%), Positives = 34/70 (48%)
Frame = -2
Query: 701 LDLTEXQXNLVXTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPNQMVKCDPRH 522
+D+TE Q NLV P S + F P T P N M KCDPRH
Sbjct: 250 VDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSNMMAKCDPRH 309
Query: 521 GKYMACCMLY 492
GKYMACC++Y
Sbjct: 310 GKYMACCLMY 319
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 138 bits (335), Expect = 3e-33
Identities = 62/72 (86%), Positives = 67/72 (93%), Gaps = 2/72 (2%)
Frame = -3
Query: 499 CCT--RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 326
CC RGDVVPKDVNAA+ TIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRA
Sbjct: 315 CCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA 374
Query: 325 VCMLSNTTAIAE 290
VCM+SN+T++AE
Sbjct: 375 VCMISNSTSVAE 386
Score = 70.9 bits (166), Expect = 9e-13
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = -1
Query: 666 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 553
YPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA
Sbjct: 262 YPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPA 299
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/98 (34%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Frame = -2
Query: 779 PTYTNLXXXXXXXXXXXXX*XRRRSEL--DLTEXQXNLVXTPVSTSHWSRTRQSSLPRRP 606
PTYTNL R L D+TE Q NLV P S +
Sbjct: 222 PTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 281
Query: 605 TMNSFPSPRSQTHASSPPNQMVKCDPRHGKYMACCMLY 492
A P + M KCDPRHGKYMACC++Y
Sbjct: 282 FHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMY 319
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/115 (33%), Positives = 65/115 (56%)
Frame = -3
Query: 490 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 311
RG + K+V+ I ++ K + FV+W P K + PPT ++ A +
Sbjct: 319 RGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPT--------GIKMASTFVG 370
Query: 310 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 146
N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 371 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 425
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 666 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 559
+PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 261 FPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWD 296
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 78.6 bits (185), Expect = 5e-15
Identities = 38/115 (33%), Positives = 64/115 (55%)
Frame = -3
Query: 490 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 311
RG + K+V+ I I+ K + FV+W P K + PP ++ A +
Sbjct: 319 RGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMAATFVG 370
Query: 310 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 146
N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 371 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 425
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 666 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 559
+PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 261 FPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWD 296
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 78.2 bits (184), Expect = 6e-15
Identities = 37/115 (32%), Positives = 65/115 (56%)
Frame = -3
Query: 490 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 311
RG + K+V+ + ++ K + FV+W P K + PPT ++ A +
Sbjct: 318 RGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIG 369
Query: 310 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 146
N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
Score = 31.1 bits (67), Expect = 0.91
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 666 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 559
+PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 260 FPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWD 295
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 78.2 bits (184), Expect = 6e-15
Identities = 37/115 (32%), Positives = 65/115 (56%)
Frame = -3
Query: 490 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 311
RG + K+V+ + ++ K + FV+W P K + PPT ++ A +
Sbjct: 318 RGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIG 369
Query: 310 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 146
N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
Score = 31.1 bits (67), Expect = 0.91
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 666 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 559
+PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 260 FPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWD 295
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 78.2 bits (184), Expect = 6e-15
Identities = 37/115 (32%), Positives = 65/115 (56%)
Frame = -3
Query: 490 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 311
RG + K+V+ + ++ K + FV+W P K + PPT ++ A +
Sbjct: 318 RGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIG 369
Query: 310 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 146
N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 666 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 559
+PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 260 FPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD 295
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 78.2 bits (184), Expect = 6e-15
Identities = 37/115 (32%), Positives = 65/115 (56%)
Frame = -3
Query: 490 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 311
RG + K+V+ + ++ K + FV+W P K + PPT ++ A +
Sbjct: 318 RGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPT--------GLKMASTFIG 369
Query: 310 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 146
N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
Score = 31.1 bits (67), Expect = 0.91
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 666 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 559
+PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 260 FPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQMWD 295
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 76.2 bits (179), Expect = 2e-14
Identities = 37/115 (32%), Positives = 65/115 (56%)
Frame = -3
Query: 490 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 311
RG + K+V+ + I+ K + FV+W P K + + P G ++ A +
Sbjct: 318 RGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVC----DIAPKG----LKMASTFIG 369
Query: 310 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 146
N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
Score = 31.9 bits (69), Expect = 0.52
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 666 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 559
+PR+HF +V +AP+ S + LSV E+T ++
Sbjct: 260 FPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWD 295
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 75.8 bits (178), Expect = 3e-14
Identities = 36/115 (31%), Positives = 64/115 (55%)
Frame = -3
Query: 490 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 311
RG + K+V+ + ++ K + FV+W P K + + P G + A +
Sbjct: 318 RGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVC----DIAPRG----LSMASTFIG 369
Query: 310 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 146
N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 666 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 559
+PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 260 FPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD 295
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 75.8 bits (178), Expect = 3e-14
Identities = 36/115 (31%), Positives = 65/115 (56%)
Frame = -3
Query: 490 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 311
RG + K+V+ + ++ K + FV+W P K + + P G ++ A +
Sbjct: 318 RGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVC----DIAPTG----LKMASTFIG 369
Query: 310 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 146
N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
Score = 31.9 bits (69), Expect = 0.52
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 666 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 559
+PR+HF +V +AP+ S + LSV E+T ++
Sbjct: 260 FPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWD 295
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Frame = -3
Query: 490 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 311
+G+V P V+ ++ I+ ++ + F+DW P +V ++ + P V ++ + ML+
Sbjct: 327 QGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSKKSPYVQTSHRVSGL-----MLA 381
Query: 310 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAALEKDYE 149
+ T+I ++R ++D + K+AF+ Y M + EF E+R+ + +L +Y+
Sbjct: 382 SHTSIRHLFSRCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYK 439
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 44.4 bits (100), Expect = 9e-05
Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Frame = -3
Query: 490 RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 311
+G+V P V+ ++ I+ ++ + F++W P +V ++ + P V ++ + ML+
Sbjct: 327 QGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSGL-----MLA 381
Query: 310 NTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM----EEGEFSEAREDLAALEKDYE 149
+ T+I +++ ++D + K+AF+ Y M + EF E+R+ + +L +Y+
Sbjct: 382 SHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYK 439
>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower] {Brassica
oleracea}
Length = 408
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 279 ALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTW 172
A ++S + +P+V+S S R WR SS P+R W
Sbjct: 31 AASSSDLNVSPNVVSIPSLSRRSWRLASSDSPLRAW 66
>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
PF03138: Plant protein family. The function of this
family of plant proteins is unknown;
Length = 698
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 374 LVVDTDLETGWTPVDELDSTLGFDGSDGRVHILGY 478
LV DT+L TPVD ++ L G VH+ GY
Sbjct: 360 LVTDTELVKEATPVDYIEHVLPLLKKYGMVHLFGY 394
>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
(NR2) {Arabidopsis thaliana}
Length = 917
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 151 RNPSRGQPGPHGLRRTLPPPYPHRRTSARKHAWRT*GRT 267
R +R +PG +G+ R+ PP P R S + H +T +T
Sbjct: 8 RQYARLEPGLNGVVRSYKPPVPGRSDSPKAHQNQTTNQT 46
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 490 RGDVVPKDVNAAIATIKTKRTIQFVDWCPT-GFKVGINYQPPTVVPGGD 347
+G V D A T TK+ + DW P+ FK PP ++P D
Sbjct: 308 QGVAVSSDKGAEANTTSTKKKVSSDDWEPSEPFKASFTI-PPYILPSSD 355
>At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK4) identical to MAP kinase kinase
4 [Arabidopsis thaliana] gi|3219271|dbj|BAA28830
gi_13265419
Length = 366
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +1
Query: 64 ASAP*KIFHWLSTLRLPHPRLQRSPCRLLRNPS--RGQPG----PHGLRRTLPPPYPHRR 225
A+A + H++S P +RS +LL++P R P P L + LPPP P
Sbjct: 301 ATASPEFRHFISCCLQREPGKRRSAMQLLQHPFILRASPSQNRSPQNLHQLLPPPRPLSS 360
Query: 226 TSA 234
+S+
Sbjct: 361 SSS 363
>At3g26855.1 68416.m03360 hypothetical protein
Length = 163
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 258 SCTPSVLSCTGTSVRVWRRESSPK 187
SC P +LS + VR W +SSPK
Sbjct: 114 SCNPMLLSTFPSIVRAWDGKSSPK 137
>At2g46530.2 68415.m05803 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 514
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -2
Query: 665 TPVSTSHWSRTRQS----SLPRRPTMNSFPSPRSQTHASSPPNQMVKCDP 528
TP T S++++S + P +SF S SQ+H S+P +++ DP
Sbjct: 271 TPTPTQQQSKSKRSRPISEITGSPVASSFLSSFSQSHESNPSVKLLFQDP 320
>At2g46530.1 68415.m05802 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362 B3 DNA binding
domain
Length = 601
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -2
Query: 665 TPVSTSHWSRTRQS----SLPRRPTMNSFPSPRSQTHASSPPNQMVKCDP 528
TP T S++++S + P +SF S SQ+H S+P +++ DP
Sbjct: 358 TPTPTQQQSKSKRSRPISEITGSPVASSFLSSFSQSHESNPSVKLLFQDP 407
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,652,700
Number of Sequences: 28952
Number of extensions: 382478
Number of successful extensions: 1463
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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