Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I09
         (789 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.9  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   4.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   6.4  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   8.5  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   8.5  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   8.5  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   8.5  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   8.5  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   8.5  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   8.5  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   8.5  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   8.5  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 369 NAPPYNPDPRVRS 331
           NAPP  P PRV S
Sbjct: 729 NAPPPPPPPRVES 741


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 171 RSVRRITAALALSTRPSLDQKHPMEYLECS*PVQR 275
           ++++R  AA++ +T PS+  K    + EC+  V R
Sbjct: 89  QNLQRQQAAMSAATDPSVVSKFRAGFSECASEVGR 123


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 457 QSAAGRPAPGTAADASSPRS 398
           +  A  P PG     SSPRS
Sbjct: 49  EEEAASPTPGDVPTPSSPRS 68



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 457  QSAAGRPAPGTAADASSPRS*LPERSAVG 371
            ++ AG P   +A+ ASS RS  P RS  G
Sbjct: 924  ETHAGSPCRNSASPASSDRSGTP-RSTNG 951


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -3

Query: 436 APGTAADASSPRS*LPERSAVGQCSTVQPGSEGAFKRSTKPAET-ATANAS 287
           +P T    S+        S+ G  S     + GA  RST P  T + +NA+
Sbjct: 88  SPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNAT 138


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -3

Query: 436 APGTAADASSPRS*LPERSAVGQCSTVQPGSEGAFKRSTKPAET-ATANAS 287
           +P T    S+        S+ G  S     + GA  RST P  T + +NA+
Sbjct: 88  SPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNAT 138


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -3

Query: 436 APGTAADASSPRS*LPERSAVGQCSTVQPGSEGAFKRSTKPAET-ATANAS 287
           +P T    S+        S+ G  S     + GA  RST P  T + +NA+
Sbjct: 88  SPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNAT 138


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -3

Query: 436 APGTAADASSPRS*LPERSAVGQCSTVQPGSEGAFKRSTKPAET-ATANAS 287
           +P T    S+        S+ G  S     + GA  RST P  T + +NA+
Sbjct: 88  SPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNAT 138


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -3

Query: 436 APGTAADASSPRS*LPERSAVGQCSTVQPGSEGAFKRSTKPAET-ATANAS 287
           +P T    S+        S+ G  S     + GA  RST P  T + +NA+
Sbjct: 88  SPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNAT 138


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -3

Query: 436 APGTAADASSPRS*LPERSAVGQCSTVQPGSEGAFKRSTKPAET-ATANAS 287
           +P T    S+        S+ G  S     + GA  RST P  T + +NA+
Sbjct: 44  SPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNAT 94


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -3

Query: 436 APGTAADASSPRS*LPERSAVGQCSTVQPGSEGAFKRSTKPAET-ATANAS 287
           +P T    S+        S+ G  S     + GA  RST P  T + +NA+
Sbjct: 88  SPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNAT 138


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -3

Query: 436 APGTAADASSPRS*LPERSAVGQCSTVQPGSEGAFKRSTKPAET-ATANAS 287
           +P T    S+        S+ G  S     + GA  RST P  T + +NA+
Sbjct: 88  SPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNAT 138


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -3

Query: 436 APGTAADASSPRS*LPERSAVGQCSTVQPGSEGAFKRSTKPAET-ATANAS 287
           +P T    S+        S+ G  S     + GA  RST P  T + +NA+
Sbjct: 88  SPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNAT 138


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,888
Number of Sequences: 336
Number of extensions: 3206
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)