Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_I09
(789 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 48 1e-05
SB_57398| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.61
SB_24103| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0) 30 2.5
SB_42213| Best HMM Match : ABC_tran (HMM E-Value=4.30058e-42) 29 3.2
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20) 29 5.7
SB_16712| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_36253| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42) 28 7.5
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 25 9.0
SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31) 28 9.9
SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49) 28 9.9
SB_31969| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 9.9
SB_16223| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 47.6 bits (108), Expect = 1e-05
Identities = 22/42 (52%), Positives = 27/42 (64%)
Frame = -3
Query: 784 LQNPQLAYXLXQAQVIMRIVDPATAXTMXHPSXPCTSNLLPG 659
LQNPQLAY L QAQV+M+IVDP A ++ H + PG
Sbjct: 172 LQNPQLAYALLQAQVVMKIVDPVIAQSILHRPNEMPGAIQPG 213
>SB_57398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Frame = +1
Query: 544 GRTGIVVLVGWR-SGIIVY--RWLCWWWI----GWYISIRLGWFITXVVNW 675
G T + + GW +GI + +C W++ GWY++ GW++T V W
Sbjct: 458 GHTLLASVCGWYLTGICGWYLTGVCGWYLTGICGWYLTGVCGWYLTDVCGW 508
Score = 30.7 bits (66), Expect = 1.4
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 188 ICGWYLTGVCGWYLTGICGWYLTGVCGW 215
Score = 30.7 bits (66), Expect = 1.4
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 204 ICGWYLTGVCGWYLTGICGWYLTGVCGW 231
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 12 VCGWYLTGVCGWYLTGVCGWYLTGVCGW 39
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 20 VCGWYLTGVCGWYLTGVCGWYLTGVCGW 47
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 28 VCGWYLTGVCGWYLTGVCGWYLTGVCGW 55
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 36 VCGWYLTGVCGWYLTGVCGWYLTGVCGW 63
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 44 VCGWYLTGVCGWYLTGVCGWYLTGVCGW 71
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 52 VCGWYLTGVCGWYLTGVCGWYLTGVCGW 79
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 60 VCGWYLTGVCGWYLTGVCGWYLTGVCGW 87
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 68 VCGWYLTGVCGWYLTGVCGWYLTGVCGW 95
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 76 VCGWYLTGVCGWYLTGVCGWYLTGVCGW 103
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 84 VCGWYLTGVCGWYLTGVCGWYLTGVCGW 111
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 92 VCGWYLTGVCGWYLTGVCGWYLTGVCGW 119
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 100 VCGWYLTGVCGWYLTGVCGWYLTGVCGW 127
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 108 VCGWYLTGVCGWYLTGVCGWYLTGVCGW 135
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 116 VCGWYLTGVCGWYLTGVCGWYLTGVCGW 143
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T V W
Sbjct: 132 VCGWYLTGVCGWYLTGICGWYLTGVCGW 159
Score = 29.9 bits (64), Expect = 2.5
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T + W
Sbjct: 124 VCGWYLTGVCGWYLTGVCGWYLTGICGW 151
Score = 29.9 bits (64), Expect = 2.5
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T + W
Sbjct: 196 VCGWYLTGICGWYLTGVCGWYLTGICGW 223
Score = 29.9 bits (64), Expect = 2.5
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +1
Query: 604 LCWWWI----GWYISIRLGWFITXVVNW 675
+C W++ GWY++ GW++T + W
Sbjct: 212 VCGWYLTGICGWYLTGVCGWYLTGICGW 239
>SB_24103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 31.5 bits (68), Expect = 0.80
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +3
Query: 159 AVTKRSVRRITAALALSTRPSLDQKHPMEYLECS*PVQRSACQEAFAVAVSAGFVDR 329
AVT+ VR++ A L S D HP EC+ PV ++ F ++ AG + R
Sbjct: 52 AVTEEGVRKLLAGLKSSKAAGPDSFHPRVLKECA-PVISPILKQIFQKSLDAGNLPR 107
>SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/42 (30%), Positives = 16/42 (38%)
Frame = +1
Query: 553 GIVVLVGWRSGIIVYRWLCWWWIGWYISIRLGWFITXVVNWR 678
G+ L W +G WL W GW GW + WR
Sbjct: 221 GVARLTDWMAG-----WLAGWLAGWLAGWLAGWLAGWLAGWR 257
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 565 LVGWRSGIIVYRWLCWWWIGWYISIRLGWFIT 660
+ GW +G + WL W GW GW +T
Sbjct: 229 MAGWLAGWLA-GWLAGWLAGWLAGWLAGWRVT 259
>SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0)
Length = 564
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 413 IIPKILVTREIRGWPMLHRTTRIRGCVQAIHETSRNRHSKCLLAC 279
++ K+ RG M RIRGCV ++ E N +K L C
Sbjct: 249 VLKKLHEILSARGKKMKENQQRIRGCVLSVIERMDNEFTKMLQGC 293
>SB_42213| Best HMM Match : ABC_tran (HMM E-Value=4.30058e-42)
Length = 1264
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -2
Query: 677 LQFTTXVINQPKRILIYHPIHHQHNHRYTIIPDRHPTSTTI 555
+ T I PK L P HHQH++ T STTI
Sbjct: 1117 INITAITITTPKASLPQSPHHHQHHNHRTTTASTTIDSTTI 1157
>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
Length = 1037
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 640 RLGWFITXVVNWRYRXYLDEXLXLQWLDRQFSL 738
R GW +++W Y E + +DRQ S+
Sbjct: 516 RAGWLTECLIDWLIHRYFQEAFVKRMMDRQMSV 548
>SB_16712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 529
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 632 IYHPIHHQHNHRYTIIPDRHPTSTTIPVRPWM 537
++HP+ Q+ HR +P RHP T VR W+
Sbjct: 412 VWHPVC-QYRHRSIPVPLRHPQYLTGCVRLWI 442
>SB_36253| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
Length = 481
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 148 RQYTPAERTNREEHTAALEIRIERIVFSVIRV 53
R++ A NRE H E R +IVFSV+ V
Sbjct: 268 RKWNRASAKNRESHHMRSETRTAKIVFSVLFV 299
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 24.6 bits (51), Expect(2) = 9.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 617 HHQHNHRYTIIPDR 576
HH H+HRY ++ +R
Sbjct: 250 HHHHHHRYAMLINR 263
Score = 21.8 bits (44), Expect(2) = 9.0
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = -2
Query: 641 RILIYHPIHHQHNHR 597
+ ++YH HH H R
Sbjct: 229 KTILYHHHHHHHRRR 243
>SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)
Length = 491
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Frame = -2
Query: 647 PKRILIYHPIHHQHNHRYTII-----PDRHPTSTT--IPVR-PWMLIFAGRELPVPRRPL 492
P +++ P+HH + + P H +PVR P L+ R +P+P RP+
Sbjct: 267 PFPVMVNRPVHHTERIPFPVPFVVNRPIHHTVQVPYPVPVRGPSRLVIINRPVPMPSRPV 326
Query: 491 TPCP 480
P P
Sbjct: 327 -PVP 329
>SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)
Length = 358
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 613 WWIGWYISIRLGWFITXVVNWRYRXY 690
WWI W I G I +V W+ + Y
Sbjct: 288 WWINWAALISCGTSIPLLVVWKAKYY 313
>SB_31969| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 655
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 346 SEGAFKRSTKPAETATANASWHAERCTG*EHS 251
S G+ KRST PA TA + A+R EHS
Sbjct: 383 SRGSRKRSTAPAHQVTAISQIPAQRVAKDEHS 414
>SB_16223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 519
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -2
Query: 566 STTIPVRPWMLIFAGRELPVPRRPLTPCPRCSTRT 462
+T P+RP+++ F LP+ +R L C + + +T
Sbjct: 191 ATNFPLRPFVIPFLKANLPLLQRELLQCAQMAKQT 225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,637,261
Number of Sequences: 59808
Number of extensions: 438445
Number of successful extensions: 1459
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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