Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I08
         (784 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    28   0.37 
DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.           27   0.87 
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   2.0  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 27.9 bits (59), Expect = 0.37
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIGPQ 522
           GR G PG+    G+P    P     RG  GP+G +GPQ
Sbjct: 559 GRDGPPGLTGEKGEP--GLP-VWKDRGPSGPSGPLGPQ 593



 Score = 27.1 bits (57), Expect = 0.65
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -3

Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPR-TVNTRGSWGPTGQIGPQ 522
           G +G  G R P     G G +G PG+   PG   Y   +  + T G  G  G +GP+
Sbjct: 107 GPKGNPGLRGPKGERGGMGDRGDPGL---PGSLGYPGEKGDLGTPGPPGYPGDVGPK 160



 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 569 PSWADGTVGPRALLIHQG 622
           P  A G VGPR L  H+G
Sbjct: 46  PPGAPGPVGPRGLTGHRG 63



 Score = 23.4 bits (48), Expect = 8.1
 Identities = 17/54 (31%), Positives = 20/54 (37%)
 Frame = -3

Query: 689 GKRGV*GSRCPTXTWSGFGRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIG 528
           G RG  G+  P       GR G PG    PG         ++  G  GP G  G
Sbjct: 60  GHRGEKGNSGPVGPPGAPGRDGMPGAPGLPGSKGVKGDPGLSMVGPPGPKGNPG 113


>DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.
          Length = 407

 Score = 26.6 bits (56), Expect = 0.87
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 698 WQXGKRGV*GSRCPTXTWSGFGRQGSPGVL 609
           +Q G R V GS  P   W+  GRQ   GVL
Sbjct: 361 FQPGPRKVSGSIMPHVLWNKLGRQHMLGVL 390


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 580 RWYSGSPGPTNTPGLP*RPKP 642
           R Y G PG   TPGL   P P
Sbjct: 612 RGYPGMPGEDGTPGLRGEPGP 632



 Score = 24.2 bits (50), Expect = 4.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 526 GPICPVGPQDPRVLTVLGRWYSGSPGPTNTPGLP*RP 636
           GP+   GP+  R    L   Y G PG    PG+P  P
Sbjct: 139 GPVGLQGPKGDRGRDGLPG-YPGIPGTNGVPGVPGAP 174



 Score = 24.2 bits (50), Expect = 4.6
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -3

Query: 635 GRQGSPGVLVGPGDPLYHRPRTVNTRGSWGPTGQIG 528
           G +G  GV+  PGD    RP      G  G  G+ G
Sbjct: 524 GERGFKGVMGTPGDAKEGRPGAPGLPGRDGEKGEPG 559



 Score = 23.4 bits (48), Expect = 8.1
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 526 GPICPVGPQDPRVLTVLG--RWYSGSPGPTNTPGLP*RPKPD 645
           GP    GPQ P+ +      +   G  GP    G+P RP P+
Sbjct: 417 GPRGYEGPQGPKGMDGFDGEKGERGQMGPKGGQGVPGRPGPE 458


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 738,415
Number of Sequences: 2352
Number of extensions: 15433
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81913191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)