Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I07
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)         37   0.020
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)            28   7.1  
SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 15/24 (62%), Positives = 21/24 (87%)
 Frame = -2

Query: 635 KISKGTIEIINDVHILKPGDKVGA 564
           KI++GTIEIINDVH++K  +K+ A
Sbjct: 128 KIARGTIEIINDVHLIKKDEKLKA 151


>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
          Length = 320

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -2

Query: 572 VGASEATLLNMLNISPFSYGLVVKQVYD---SGTIFAP-EILDIKPEDLRAKFQAGVANV 405
           +  S +  + +L +SP  YG+    +     +G +F    IL + PE + +   A VA  
Sbjct: 82  IAGSSSVYIGLLGLSPAQYGITFAAIVSALIAGALFTQRRILQLGPEKIVSIGAALVATG 141

Query: 404 AALSLAI 384
           A  +LAI
Sbjct: 142 ALTTLAI 148


>SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 529 LHSHMVLLLSRYMILELFLHLKFWTSNQKIS 437
           L S +++++ RY+ +   LH + W S +K+S
Sbjct: 145 LLSMLLMMVDRYIAIAWGLHYRIWKSQRKVS 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,211,616
Number of Sequences: 59808
Number of extensions: 297586
Number of successful extensions: 645
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)