Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I07
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      149   3e-36
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   145   2e-35
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...   144   6e-35
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con...    30   1.9  
At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containi...    28   7.7  

>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  149 bits (360), Expect = 3e-36
 Identities = 70/130 (53%), Positives = 92/130 (70%)
 Frame = -2

Query: 635 KISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILD 456
           KI+KGT+EII  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++F PE+L+
Sbjct: 149 KINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLN 208

Query: 455 IKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXI 276
           +  +DL  KF AGV+ + ALSLAI YPT+A+APH   N +KN+L               +
Sbjct: 209 LTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENV 268

Query: 275 KEFIKDPSKF 246
           KEF+KDP+KF
Sbjct: 269 KEFLKDPTKF 278


>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  145 bits (352), Expect = 2e-35
 Identities = 67/130 (51%), Positives = 91/130 (70%)
 Frame = -2

Query: 635 KISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILD 456
           KI+KGT+EII  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++F+PE+LD
Sbjct: 148 KINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLD 207

Query: 455 IKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXI 276
           +  + L  KF +G++ V +L+LA+ YPT+A+APH   N +KN L               +
Sbjct: 208 LTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKV 267

Query: 275 KEFIKDPSKF 246
           KEF+KDPSKF
Sbjct: 268 KEFLKDPSKF 277


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =  144 bits (349), Expect = 6e-35
 Identities = 66/130 (50%), Positives = 91/130 (70%)
 Frame = -2

Query: 635 KISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILD 456
           KI+KGT+EII  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++F+PE+LD
Sbjct: 148 KINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLD 207

Query: 455 IKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXI 276
           +  + L  KF +G++ V +L+LA+ YPT+A+APH   N +KN L               +
Sbjct: 208 LTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKV 267

Query: 275 KEFIKDPSKF 246
           KE++KDPSKF
Sbjct: 268 KEYLKDPSKF 277


>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
           contains similarity to 60S acidic ribosomal protein
           GI:5815233 from [Homo sapiens]
          Length = 235

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/68 (20%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -2

Query: 635 KISKGTIEIINDVHILKPGDKVGASEATLLNML--NISPFSYGLVVKQVYDSGTIFAPEI 462
           +++KGT+E++ D  + + G ++    A +L +L   ++ F   L+ +       ++  ++
Sbjct: 162 RLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFELYREDL 221

Query: 461 LDIKPEDL 438
            ++  EDL
Sbjct: 222 SELYREDL 229


>At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 632

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 27/98 (27%), Positives = 42/98 (42%)
 Frame = -2

Query: 620 TIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPED 441
           TIEI N VH  + GD+  +    +  ML         + +++   G  + P    +  +D
Sbjct: 502 TIEIENKVHEFRAGDREHSKSKEIYTMLR-------KISERIKSHG--YVPNTNTVL-QD 551

Query: 440 LRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 327
           L    +     V +  LAI Y  I++ P S    FKNL
Sbjct: 552 LEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNL 589


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,452,942
Number of Sequences: 28952
Number of extensions: 211006
Number of successful extensions: 508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)