Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I05
         (813 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49491| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   5e-13
SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)                35   0.090
SB_25659| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.64 
SB_45066| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    29   4.5  
SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)                  29   5.9  
SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_19357| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)             28   7.8  

>SB_49491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 31/43 (72%), Positives = 37/43 (86%)
 Frame = -2

Query: 407 KAPQAAGRIHTDFEKGFIMAEVMHFKDFKEEGTEAACKAAGKY 279
           + P  +G+IHTDFEKGFIMAEVM + DFKE G+EAACK+AGKY
Sbjct: 4   QGPGCSGKIHTDFEKGFIMAEVMKYDDFKECGSEAACKSAGKY 46



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = -1

Query: 249 EDGDIIFFKFNA 214
           +DGDIIFFKFNA
Sbjct: 56  QDGDIIFFKFNA 67


>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
          Length = 794

 Score = 34.7 bits (76), Expect = 0.090
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
 Frame = -3

Query: 574 NCWTWIRLNVSLT*RN------TA*RVHWTRSLFKDIRLCNWSISSQLEQMKSKPGQFRK 413
           NCW    +  S   R        A R+ W    F   R C  + S++L  ++   G    
Sbjct: 4   NCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFSQSRRCKTTASAKLACLQGNCG---- 59

Query: 412 AQRLLKPQDVSTPTSRRVSSWPKSCISRTSRK 317
           A+  L P++ S+PT RR + WP+  ++   R+
Sbjct: 60  AETGLVPREKSSPTKRRETLWPEQKLTVFGRR 91


>SB_25659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +3

Query: 372 VGVDTSCGLRSLCA--FLNCPGFDFICSSCEEILQLQSLISLNNDLVQCTRYAVFLQVRD 545
           VGV  +CG R  CA   L  P  +FI S  + + Q++ +  L    + C      +QV +
Sbjct: 235 VGVSPACGSRGQCATVLLENPRGEFILSRDQLLHQVKCVFGLGTGSLSCANRPSAIQVLE 294

Query: 546 TF 551
            F
Sbjct: 295 LF 296


>SB_45066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 28

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 637 EWIDKNDPGSPLIPFSGVL 581
           EW+D  D G+ +IPFSG L
Sbjct: 7   EWVDSRDKGAAIIPFSGEL 25


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 24/79 (30%), Positives = 39/79 (49%)
 Frame = -3

Query: 409  QRLLKPQDVSTPTSRRVSSWPKSCISRTSRKRVPKLRVKPPENTGXQGRNYVVRGWRHHL 230
            ++L   + V+    RR  S  +  I R  R+R  + R +     G  GR    RG R+  
Sbjct: 1839 RKLRHRRQVNRRRRRRQRSRRRKAIRRILRRRFGR-RSRRINRHGRLGRRTGRRG-RYLR 1896

Query: 229  LQVQRGRRFEGRQKEMTRQ 173
            L V+RGRR+  R + ++R+
Sbjct: 1897 LLVRRGRRYGRRGRRVSRR 1915


>SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)
          Length = 685

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = -3

Query: 367 RRVSSWPKSCISRTSRKRVPKLRVKPPENTGXQ----GRNYVVRGWRHH-LLQVQRGR-R 206
           R   S PK  IS+T +K  PK +  P  + G +      +     W HH ++Q  +G   
Sbjct: 53  RHSESLPKKTISKTPKKGTPKRKQDPSPSRGDRFIPNRPSNADCDWSHHQMMQANQGETA 112

Query: 205 FEGRQKE 185
            EG  +E
Sbjct: 113 IEGSSEE 119


>SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -2

Query: 563 MDPTERVSYLKEHGITSALDKIIVQGYKALQLEYFFTAGADEVKAW 426
           + P +R++ L+EH I   L ++++    A+ L +F  +    VK+W
Sbjct: 262 LKPFQRLTILREHFIPQFLHQLVLTPVFAVFLRWFDNSIRSAVKSW 307


>SB_19357| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)
          Length = 187

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 408 CAFLNCPGFDFICSSC 455
           C  LNCPG  F CS+C
Sbjct: 141 CQDLNCPGCHFPCSAC 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,566,950
Number of Sequences: 59808
Number of extensions: 413971
Number of successful extensions: 1585
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1584
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)