Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I05
         (813 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30580.1 68414.m03741 expressed protein                            127   8e-30
At1g56050.1 68414.m06436 GTP-binding protein-related similar to ...    93   3e-19
At4g00460.1 68417.m00063 expressed protein contains Pfam profile...    31   0.69 
At1g69890.1 68414.m08043 expressed protein  contains Pfam profil...    30   2.1  
At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger) fa...    28   6.4  
At1g35240.1 68414.m04370 transcriptional factor B3 family protei...    28   8.5  

>At1g30580.1 68414.m03741 expressed protein
          Length = 394

 Score =  127 bits (307), Expect = 8e-30
 Identities = 61/101 (60%), Positives = 72/101 (71%)
 Frame = -2

Query: 581 ESKLLDMDPTERVSYLKEHGITSALDKIIVQGYKALQLEYFFTAGADEVKAWTIQKGTKA 402
           E  L DM P E   Y +E+ + SAL +II  G+ A+ L YFFTAG DEVK W I++ +KA
Sbjct: 267 ERSLADMAPDEAAKYCEENKLQSALPRIIKTGFSAINLIYFFTAGPDEVKCWQIRRQSKA 326

Query: 401 PQAAGRIHTDFEKGFIMAEVMHFKDFKEEGTEAACKAAGKY 279
           PQAAG IHTDFE+GFI AEVM F+D KE G E A KAAGKY
Sbjct: 327 PQAAGAIHTDFERGFICAEVMKFEDLKELGNEPAVKAAGKY 367


>At1g56050.1 68414.m06436 GTP-binding protein-related similar to
           GTP-binding protein GI:10176676 from [Bacillus
           halodurans]
          Length = 421

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 47/101 (46%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
 Frame = -2

Query: 584 VESKLLDMDPTERVSYLKEHGIT-SALDKIIVQGYKALQLEYFFTAGADEVKAWTIQKGT 408
           VES+L ++   ER  YL   G++ S L  +I   Y  L L+ +FT+G  E +AWTI  G 
Sbjct: 298 VESELTELPLEERTEYLNSLGVSESGLGNLIRATYSLLGLQTYFTSGEKETRAWTIHAGM 357

Query: 407 KAPQAAGRIHTDFEKGFIMAEVMHFKDFKEEGTEAACKAAG 285
            APQAAG IH+DFEKGFI AE + ++DF   G+ AA +  G
Sbjct: 358 TAPQAAGVIHSDFEKGFIRAETVAYEDFVTAGSIAAAREKG 398


>At4g00460.1 68417.m00063 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 473

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 19/86 (22%), Positives = 39/86 (45%)
 Frame = -3

Query: 631 IDKNDPGSPLIPFSGVLNLNCWTWIRLNVSLT*RNTA*RVHWTRSLFKDIRLCNWSISSQ 452
           ID+ND  +   P    ++++ + + R   S T    + ++  T S   +   CNW + ++
Sbjct: 19  IDQNDQSAVETPVYSTMSIDSFVYPR-TCSETTSGFSDQIDETNSFCSEASPCNWPVLTE 77

Query: 451 LEQMKSKPGQFRKAQRLLKPQDVSTP 374
            +  K   G   ++   L  Q++S P
Sbjct: 78  SKSSKCLSGLEMQSNECLVVQEISEP 103


>At1g69890.1 68414.m08043 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 279

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 394 PQDVSTPTSRRVSSWPKSCISRT-SRKRVPKLRVKPPENTG 275
           P  V+TP   R  S+  S +SRT S K   +L V PP++ G
Sbjct: 157 PAPVTTPPPHRRPSYTYSPVSRTSSEKSEEELTVPPPKSEG 197


>At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 508

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 500 SCPMHSLCRVPSSKRHVQSDPCPAI 574
           +CP+  L  +PS  R  Q DP P++
Sbjct: 137 TCPLCRLALIPSRSRQSQDDPVPSL 161


>At1g35240.1 68414.m04370 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profiles: PF02309 AUX/IAA family, PF02362: B3 DNA
           binding domain
          Length = 615

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/63 (30%), Positives = 22/63 (34%)
 Frame = +2

Query: 131 TRLKYSMCTRSRRTLSRHFFLASFKPAPALNLKKMMSPSSNDVITTLXACIFRRLYTQLR 310
           T L+Y   T      SR       +P P LN    M     + ITT     FR     L 
Sbjct: 415 TSLRYRDTTEDAMNPSRLLMSYPVQPMPKLNYNNQMVTQIEENITTKAVTNFRLFGVSLA 474

Query: 311 YPL 319
            PL
Sbjct: 475 IPL 477


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,416,077
Number of Sequences: 28952
Number of extensions: 288761
Number of successful extensions: 819
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)