Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_I04
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)                 36   0.049
SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)                 29   5.6  
SB_15118| Best HMM Match : IncA (HMM E-Value=0.44)                     29   5.6  

>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 24/75 (32%), Positives = 40/75 (53%)
 Frame = -1

Query: 500 GCVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAV 321
           GCVV + N+P   T D+IL FF  F +  + +   Y   G+ +GDA + F T  DA  A+
Sbjct: 544 GCVVGIRNLPSSITADQILDFFYGFNVLPETIKIHYLSPGRSSGDAMITFPTSSDAYAAI 603

Query: 320 KTHHLDTIHERRITL 276
              +   + ++++ L
Sbjct: 604 DQLNFRPVGKKKVQL 618



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
 Frame = -1

Query: 518 QDFGAPGCVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYN--ERGQPTGDARVAFRT 345
           QD  A   +V M  +PF ++  ++ +FF+  +++  D+++  +   +G+ TG A V F++
Sbjct: 326 QDQEATSTIVRMFGLPFESSKRDLYKFFNGLKIASIDLLKHKSGKNQGKNTGVAFVVFKS 385

Query: 344 PFDATRAVK 318
             DA++A+K
Sbjct: 386 NNDASKALK 394



 Score = 36.3 bits (80), Expect = 0.028
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -1

Query: 494 VVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAV 321
           V+ M+ +PF AT  +I  FF    L   D+    N+ G+ +G +   F    DA +A+
Sbjct: 4   VIKMKGLPFEATSRDIQMFFDGLSLREKDIHLAANKDGKASGISFAVFNVDDDARKAM 61


>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/61 (31%), Positives = 35/61 (57%)
 Frame = -1

Query: 494 VVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAVKT 315
           VV +  +P+  + +EI QFF+  E+  + +    +E G+ TG+  V F +P  A +A++ 
Sbjct: 39  VVKLRGLPYGCSKEEIAQFFTGLEIVPNGITITLDEEGKTTGEGFVEFASPEIAGQAMQK 98

Query: 314 H 312
           H
Sbjct: 99  H 99


>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
          Length = 623

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = -1

Query: 485 MENVPFRATIDEILQFFSEFELSHDDVIRRY--NERGQPTGDARVAFRTPFDATRAVKTH 312
           M  +PF+A    IL+FFS  +     V  R+  N++GQP+G A V F +  D  +A+K  
Sbjct: 172 MRGLPFKAKDKHILEFFSPLK----PVAIRFVMNKKGQPSGCAFVDFSSKSDLEKALK-R 226

Query: 311 HLDTIHERRITL 276
           + D +  R I L
Sbjct: 227 NKDYLQGRYIEL 238


>SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = -1

Query: 494 VVSMENVPFRATIDEILQFFSE---FELSHDDVIRRYNERGQPTGDARVAFRTPFDATRA 324
           ++ M  +PF     ++++FF +          ++      G+ TGDA V F T      A
Sbjct: 325 IIRMRGLPFSTKAADVVRFFGDDVPVYRGEGGILMVRGRNGKATGDAFVLFETEEHGRAA 384

Query: 323 VKTH 312
           +K H
Sbjct: 385 LKKH 388


>SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 73  RMTRP*KLLSTLERRETHNVRPSFR*NVTATQRDHSQTGLALGTDSMSK 219
           R  +P  LLST ER +   VRP+ R  + AT R  +    +L T    K
Sbjct: 268 RKVQPSHLLSTRERDKADRVRPTIRTPMKATLRSQTTFIFSLSTSVRGK 316


>SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)
          Length = 600

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 687 ATAVTEPSSVEASAFEPSGSPKRSXWGKSSXH 782
           AT  + PSS + S  EP+ S   + WGKSS H
Sbjct: 69  ATCKSNPSSPKLSC-EPTISRSSNPWGKSSLH 99


>SB_15118| Best HMM Match : IncA (HMM E-Value=0.44)
          Length = 835

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 503 PGCVVSMENVPFRATIDEILQFFSEFELSHDDVIRR-YNERGQP 375
           PG V S+ N  F+A  +    +F + + S + VIRR + ER QP
Sbjct: 275 PGLVGSIANFVFKAAGEAPRSWFVKSKQSSEQVIRRGHRERRQP 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,611,524
Number of Sequences: 59808
Number of extensions: 288059
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)