Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_I04
(785 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein... 52 6e-07
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 34 0.12
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 33 0.28
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 32 0.38
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 32 0.50
At4g23460.1 68417.m03381 beta-adaptin, putative strong similarit... 30 1.5
At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM dom... 29 2.6
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 29 3.5
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 28 6.1
At4g03690.1 68417.m00504 hypothetical protein very low similarit... 28 6.1
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 28 6.1
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 28 6.1
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 28 8.1
>At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to SP|P52597
Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
{Homo sapiens}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 350
Score = 51.6 bits (118), Expect = 6e-07
Identities = 32/85 (37%), Positives = 44/85 (51%)
Frame = -1
Query: 530 DPALQDFGAPGCVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAF 351
D +D G ++ + +PF A ++IL FF +FELS D V N G+PTG+A V F
Sbjct: 252 DDGKEDIEHTG-ILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEAFVEF 310
Query: 350 RTPFDATRAVKTHHLDTIHERRITL 276
R D +RA T+ R I L
Sbjct: 311 RNAED-SRAAMVKDRKTLGSRYIEL 334
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = -1
Query: 494 VVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAV 321
V+ M +P+ +I++FFS +++ V G+ TG+A V F T +A RA+
Sbjct: 201 VLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAM 258
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 32.7 bits (71), Expect = 0.28
Identities = 23/81 (28%), Positives = 35/81 (43%)
Frame = -1
Query: 485 MENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAVKTHHL 306
+ N+P +E+ + F F D I R GQP G A V F +DA A ++ +
Sbjct: 51 VRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNR 110
Query: 305 DTIHERRITLNIL*RPRSSGE 243
+ R IT+ + R E
Sbjct: 111 RSFAGREITVVVASESRKRPE 131
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 32.3 bits (70), Expect = 0.38
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = -1
Query: 485 MENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAVKTHHL 306
+ N+PF+A +I FS D I + E G P G A V F DA A+K +
Sbjct: 335 IRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNG 394
Query: 305 DTIHERRITLN 273
+R I ++
Sbjct: 395 HMFGKRPIAVD 405
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = -1
Query: 491 VSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAVKTH 312
+ ++NV T +E+ + FS+ + +E+G+ G V F TP +A AVKT
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLM-CDEKGKSKGFGFVCFSTPEEAIDAVKTF 364
Query: 311 HLDTIHERRITLNI 270
H H + + + I
Sbjct: 365 HGQMFHGKPLYVAI 378
>At4g23460.1 68417.m03381 beta-adaptin, putative strong similarity
to SP|Q10567 Adapter-related protein complex 1 beta 1
subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
[Drosophila melanogaster] GI:434902; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 893
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Frame = +3
Query: 129 RPTVLSVKRHSDTTGSLTNRASV-GNRFDVEARAEVFTG----LPAAPGPLEDVEGDPAL 293
+ TV + GS T GN D A TG L AAP P+ D+ GD
Sbjct: 587 KTTVQKTEDEDYVEGSETGYPEASGNPVDGAASPSATTGYVTKLAAAPAPVPDLLGDLMG 646
Query: 294 VDRVEVVRLDGARRVEGRP 350
D +V +D GRP
Sbjct: 647 SDNAAIVPVDEPTTPSGRP 665
>At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM
domain-containing protein low similarity to SP|P40748
Synaptotagmin III (SytIII) {Rattus norvegicus}; contains
Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
Length = 1027
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 258 GPLEDVEGDPALVDRVEVVRLDGARRVEGRPE 353
G E G+ L D+ +++ L+G + +EG P+
Sbjct: 129 GKWESTSGEKVLNDKQDIINLEGVKELEGSPK 160
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = -1
Query: 485 MENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAVKTHHL 306
+ N+P A +++ F F D + R G+P G V +R DA A+K +
Sbjct: 51 IRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNH 110
Query: 305 DTIHERRITL 276
I R I +
Sbjct: 111 KVIGGREIAI 120
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 40 KKSIYSLQANKRMTRP*KLLSTLERRETHNVRPSFR 147
+ SI S ++ ++ P L S + R TH V PSFR
Sbjct: 33 RSSIESSSSSSSLSSPPSLSSPISRTWTHQVFPSFR 68
>At4g03690.1 68417.m00504 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 570
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 270 DVEGDPALVDRVEVVRLDGARRVEGRPEGDTRVARRLPALVVP 398
D+ G R+++VRL G + V+GRP TRV + + L++P
Sbjct: 436 DLHGGLMNGTRLQIVRL-GDKLVQGRPLTGTRVGKLVLILMMP 477
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/70 (24%), Positives = 36/70 (51%)
Frame = -1
Query: 479 NVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAVKTHHLDT 300
N+P R +I +L FF +FE+ +I ++ G+ G F + +A +A++ + +
Sbjct: 303 NLPPRTSIQRMLYFFQDFEVVRVRLI--VDQSGKHMGCGYFEFASANEAEKALEQRNGKS 360
Query: 299 IHERRITLNI 270
+ +I L +
Sbjct: 361 LRYHKIFLEL 370
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -1
Query: 500 GCVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPFDATRAV 321
G + ++N+ T D++ + F+ F + R + G G VAF TP +ATRA+
Sbjct: 326 GSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMR-DPSGVSRGSGFVAFSTPEEATRAI 384
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = -1
Query: 518 QDFGAPGCVVSMENVPFRATIDEILQFFSEFELSHDDVIRRYNERGQPTGDARVAFRTPF 339
Q+ A G + + ++PF A ID + F +F + I+ N+RG V F
Sbjct: 312 QEAVAEGTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEAD 371
Query: 338 DATRAVK 318
A RA++
Sbjct: 372 AAHRAIE 378
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,645,565
Number of Sequences: 28952
Number of extensions: 185392
Number of successful extensions: 535
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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