Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H23
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   141   5e-34
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              96   3e-20
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)                  95   5e-20
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 68   8e-12
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)                 37   0.022
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.63 
SB_15413| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)                  28   7.7  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  141 bits (342), Expect = 5e-34
 Identities = 67/84 (79%), Positives = 68/84 (80%)
 Frame = -2

Query: 541 PVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFT 362
           P L      V+   PE AVGGIYGVLNRRRG V EES VAGTPMFIVKAYLPV ESFGFT
Sbjct: 713 PCLLEPVYSVEIQCPESAVGGIYGVLNRRRGQVLEESNVAGTPMFIVKAYLPVMESFGFT 772

Query: 361 ADLRSNTGGQAFPQCVFDHWQVLP 290
           ADLRS TGGQAFPQCVFDHWQVLP
Sbjct: 773 ADLRSKTGGQAFPQCVFDHWQVLP 796



 Score =  105 bits (251), Expect = 6e-23
 Identities = 47/61 (77%), Positives = 53/61 (86%)
 Frame = -1

Query: 665 LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCP*SSC 486
           +RGVRFNI+DVTLH DAIHRGGGQIIPT RR LYAC+LTA+P L+EPVY  EIQCP S+ 
Sbjct: 672 VRGVRFNIHDVTLHADAIHRGGGQIIPTARRVLYACMLTAKPCLLEPVYSVEIQCPESAV 731

Query: 485 G 483
           G
Sbjct: 732 G 732



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 18/29 (62%), Positives = 20/29 (68%)
 Frame = -3

Query: 291 PGDPCEPQSKPYNVVQETRKRKGLKEGLP 205
           PGD  +  S P  VV  TRKRKGLKEG+P
Sbjct: 796 PGDVHDLASMPGQVVANTRKRKGLKEGIP 824


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 42/94 (44%), Positives = 61/94 (64%)
 Frame = -2

Query: 550 LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 371
           + +P L   Y FV+   P   V  +Y VL RRRGHV +++ V G+P++ +KA++P  +SF
Sbjct: 690 MATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSF 749

Query: 370 GFTADLRSNTGGQAFPQCVFDHWQVLPWRPVRTS 269
           GF  DLR++T GQAF   VF HWQ++P  P+  S
Sbjct: 750 GFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKS 783



 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 30/56 (53%), Positives = 37/56 (66%)
 Frame = -1

Query: 665 LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCP 498
           +R V+F I D  +  + IHRGGGQIIPT RR  Y+  L A PRLMEP +  E+Q P
Sbjct: 652 IRNVKFKILDAVIAGEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPYFFVEVQAP 707


>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
          Length = 119

 Score = 95.5 bits (227), Expect = 5e-20
 Identities = 42/92 (45%), Positives = 60/92 (65%)
 Frame = -2

Query: 544 SPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGF 365
           +P L   Y FV+   P   V  +Y VL RRRGHV +++ V G+P++ +KA++P  +SFGF
Sbjct: 2   TPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGF 61

Query: 364 TADLRSNTGGQAFPQCVFDHWQVLPWRPVRTS 269
             DLR++T GQAF   VF HWQ++P  P+  S
Sbjct: 62  ETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKS 93


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 30/69 (43%), Positives = 42/69 (60%)
 Frame = -2

Query: 487 VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 308
           +G +Y V+ RR G V  E    G+ +F V+A LPV ESFGF+ ++R  T G A PQ +F 
Sbjct: 427 LGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFGFSEEIRKRTSGLANPQLMFS 486

Query: 307 HWQVLPWRP 281
           HW+ +   P
Sbjct: 487 HWEAIDLDP 495


>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
          Length = 238

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 25/79 (31%), Positives = 37/79 (46%)
 Frame = -2

Query: 568 CTHVC*LLSPVLWSLYIFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYL 389
           C H   +LS   W  + F    V +   G +   +NRR G V       G   F + A +
Sbjct: 130 CQHCWLMLSLFAWG-FSFASGDVCDT--GTVIAGVNRRHGQVTGTDANEG--YFTLFAEV 184

Query: 388 PVNESFGFTADLRSNTGGQ 332
           P+N+ FG+  +LRS T G+
Sbjct: 185 PLNDMFGYATELRSQTQGK 203


>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 650 FNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 516
           FN   V L    + R   +I+PT RR  +  LLT+     +PVY+
Sbjct: 526 FNKLGVFLGLAEVRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYI 570


>SB_15413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/69 (26%), Positives = 27/69 (39%)
 Frame = -2

Query: 376 SFGFTADLRSNTGGQAFPQCVFDHWQVLPWRPVRTSEQALQRCTGNEKEERIEGRSPRLN 197
           SFG   + + +       QC+FD    + W P   +  AL   T      R+ G  PR  
Sbjct: 269 SFGNAIEFKRHRNDMLVTQCIFDVTVTISWGPWGKT-LALFPTTATTLLRRVLGEKPRFY 327

Query: 196 SIFGQIVNY 170
            +  Q+  Y
Sbjct: 328 FLLRQLRYY 336


>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
          Length = 283

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 303 QWSNTHCGKACPPVLE--RKSAVKPNDSL 383
           Q+   +CG ACPP  E   KS VK N  L
Sbjct: 159 QYDRVYCGAACPPDFEDYMKSLVKVNGIL 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,357,121
Number of Sequences: 59808
Number of extensions: 507847
Number of successful extensions: 1252
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)