Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H16
         (875 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48395| Best HMM Match : MAM (HMM E-Value=0)                         29   4.9  
SB_284| Best HMM Match : rve (HMM E-Value=0.001)                       29   6.5  
SB_42914| Best HMM Match : Chlam_PMP (HMM E-Value=3.3e-10)             28   8.6  

>SB_48395| Best HMM Match : MAM (HMM E-Value=0)
          Length = 901

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 324 SLTRACATADTRSDLDSVRFVAHAHSLHSYNKYTHSS 434
           S  RA   +D  + LD + F+ +    H++NKY H S
Sbjct: 37  SFKRAILESDDANTLDKI-FIVNEGKAHNFNKYYHES 72


>SB_284| Best HMM Match : rve (HMM E-Value=0.001)
          Length = 1201

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +2

Query: 86   THNYLNYSANYELTNLQSLKQLNTYRTLRSSHSVRE*SIRYRKTESTDVINLHVNK 253
            +H +  Y+ +Y + +L  L+Q  T +  R S +    +    + +  DV+ LH  K
Sbjct: 1030 SHEFRQYTNSYGIEHLPRLRQKLTLQKARQSLNYNRGAKELEELKQGDVVRLHPTK 1085


>SB_42914| Best HMM Match : Chlam_PMP (HMM E-Value=3.3e-10)
          Length = 1211

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 412 YECSEWACATNLTESRSDRVSAVAHARVSETCAWFCKKNVH 290
           ++ S+ A A N+T+S    VS  AHAR    C W  K  +H
Sbjct: 512 FDQSKGAVAINITDSFF--VSNTAHARGGAICVWQNKVRLH 550


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,702,697
Number of Sequences: 59808
Number of extensions: 400356
Number of successful extensions: 970
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)