Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H15
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    29   0.58 
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    28   1.8  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   5.4  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    25   9.4  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 584 VSPRHHTKKTRTATSLMPSPTARA 513
           V  R+H+K+TRTATS +   T RA
Sbjct: 478 VQTRNHSKRTRTATSSVEETTPRA 501


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
 Frame = -3

Query: 613 TKIFGTLCCQFHLVIIPRKLEQLHL*--CHPRQHGRDSNLQLSIQEP---ILQSVQQPIP 449
           +K   +   Q   ++ P  ++++ L     PR    DS +      P   I Q    P  
Sbjct: 133 SKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSISQYANMPEN 192

Query: 448 VSIPAARNVLPN*DLLIQAVAQYLQNRYKSVHKTEISGSD 329
            ++   ++ + N +  I   A + QN+Y+S+H  +IS SD
Sbjct: 193 YALNTKKSKISNENDTIFK-ANFQQNKYESLHAKQISASD 231


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 268 KYCYVLIYFTLKKSLYENSANLNLRFRFCEQI 363
           KY   L   TLKKSLY+N     L F+F + I
Sbjct: 474 KYNPELAAETLKKSLYKNVDQPQLLFQFYQSI 505


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 671 DPILTKKAIPRAVPLXLRNHENIRDFVLPVS 579
           DP++     P+ +P+  RN  N   ++ PV+
Sbjct: 284 DPLIRNDYEPQLLPICWRNKLNFNSYIKPVA 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,913
Number of Sequences: 5004
Number of extensions: 54369
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)