Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H15
         (792 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05800.1 68414.m00606 lipase class 3 family protein similar t...    29   4.7  
At5g05530.1 68418.m00600 zinc finger (C3HC4-type RING finger) fa...    28   8.2  

>At1g05800.1 68414.m00606 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile PF01764: Lipase
          Length = 471

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = -1

Query: 729 PSKXTRNCMCVIRPRRNVIGSNPYEKGYPACSTFXLTESRKYSGLCVASFTSSSYQENSN 550
           PS+     + + R  R + GSN +E      S     E  +Y  L  AS+       NS 
Sbjct: 70  PSRAPAVTLPLSRVWREIQGSNNWENLIEPLSPILQQEITRYGNLLSASYKGFDLNPNSK 129

Query: 549 SYIS 538
            Y+S
Sbjct: 130 RYLS 133


>At5g05530.1 68418.m00600 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 199

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 399 MRRSQFGSTFLAAGIDTGIGCCTDCKIGSCIDSCRFESRPCCRGWH*RC 545
           M  S+  +T + A   T +  CT C    C D    E+  CC  +H  C
Sbjct: 127 MEESKGWTTCIPAKSITPVNECTICLEELCHDEESIETHDCCHVFHKLC 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,221,738
Number of Sequences: 28952
Number of extensions: 272801
Number of successful extensions: 588
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)