Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H11
         (823 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    24   1.7  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   3.9  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 622 PYHLYCAPSSPSPGXH 669
           P+ +Y  P SPS G H
Sbjct: 98  PHRIYMHPESPSKGSH 113


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -2

Query: 147 HHDQVRAQQHPGPGRAQGRPAHGLQQPYMQ 58
           HH     QQH   G  QG   H    P+ Q
Sbjct: 178 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQ 207


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -2

Query: 147 HHDQVRAQQHPGPGRAQGRPAHGLQQPYMQ 58
           HH     QQH   G  QG   H    P+ Q
Sbjct: 180 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQ 209



 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 679 RGGSRRGHXKCVVSIPXWVLXRLNNA 756
           +GG RR     VV+ P W   R ++A
Sbjct: 38  QGGRRRAARPGVVTTPRWGCARASSA 63


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,929
Number of Sequences: 336
Number of extensions: 3646
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)