Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H11
         (823 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)             323   9e-89
SB_20217| Best HMM Match : Amidase (HMM E-Value=2.3e-21)               30   2.6  
SB_44329| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)                  29   4.6  
SB_52551| Best HMM Match : NUC130_3NT (HMM E-Value=6.4)                28   8.0  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      28   8.0  
SB_20967| Best HMM Match : FDX-ACB (HMM E-Value=2.2e-07)               28   8.0  
SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score =  323 bits (794), Expect = 9e-89
 Identities = 144/188 (76%), Positives = 167/188 (88%)
 Frame = -3

Query: 614 GYRYDWKIGEAQKNLLRTHTTAVSARMLYRLAQQTEFTPQKYFSIDKVFRNETLDATHLA 435
           GY+Y+WK  EA+KNLLRTHTTAVSARMLY+L QQ +FTP K+FSID+VFRNETLDATHLA
Sbjct: 211 GYQYEWKTEEAKKNLLRTHTTAVSARMLYKLGQQEKFTPAKFFSIDRVFRNETLDATHLA 270

Query: 434 EFHQVEGVVADRGLGLADLITVLDAFFKRLGFDQLQFKPAYNPYTEPSMEIFAYHTGLAK 255
           EFHQ+EG+VADR L L DLI  L  FF++LG  +L+FKPAYNPYTEPSME+F+YH GL K
Sbjct: 271 EFHQIEGLVADRNLTLGDLIGTLHQFFRKLGITKLRFKPAYNPYTEPSMEVFSYHEGLKK 330

Query: 254 WIEIGNSGVFRPEMLLPMGLPEDVNVIAWGLSLERPTMIKYGLNNIRDLVGPKVDLRMVY 75
           W+E+GNSGVFRPEML PMGLP+DV+VIAWGLSLERPTMIKYG++NIRDL+G KVDL MVY
Sbjct: 331 WVEVGNSGVFRPEMLRPMGLPDDVSVIAWGLSLERPTMIKYGISNIRDLIGHKVDLDMVY 390

Query: 74  NNPICRLD 51
            NPIC L+
Sbjct: 391 RNPICLLE 398


>SB_20217| Best HMM Match : Amidase (HMM E-Value=2.3e-21)
          Length = 457

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 35/147 (23%), Positives = 59/147 (40%)
 Frame = +3

Query: 102 PDQVPDVVEPVLDHGGPLEGQAPRYHVHVLRQAHGQQHLRSEHPRITNLYPFGETGVVCE 281
           PD+   VV  VLD GG + G+A    + +     G     +  P +  L    ETG    
Sbjct: 124 PDEDATVVTRVLDAGGTIVGKAVCEELSI----SGSSFTAATGPVMNPLDNRRETG---- 175

Query: 282 YFHAGFGVGVVRRLELQLVEAEPLEEGVQHGDEVGEPEPAVRDHALHLVELRQVGGVQGL 461
              +  G G +   ++  +    L EG  H +   + +  V++ ++ L E R    V G+
Sbjct: 176 --GSSSGCGALLNGDISGIRIGLLREGFGHQNSEEDVDRIVKEASIRLAE-RTGHEVVGI 232

Query: 462 VAEHLIDAEVLLRSELCLLRQPVQHPG 542
                +    LL +  C+  + V H G
Sbjct: 233 SVPMHLQGSALLTAISCIGGRRVLHDG 259


>SB_44329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 332 LQFKPAYNPYTEPSMEIFAYHTGLAKWIEIGNSGVFRPEMLL 207
           L ++   N Y E + E  A H G+ KW   GN   F P  +L
Sbjct: 222 LSYRQRLNVYKE-NWEKLAVHFGILKWASTGNLEKFSPAEIL 262


>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1283

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 81   HAQVDLGPDQVPDVVEPVLDHGGPLEGQAPRYHVHVLRQAHG--QQHLRSEHP 233
            H  ++ GP ++P      + H GP +G    + VH  R  H    +HL  EHP
Sbjct: 897  HPFIEQGPVEIP------ISHSGPWQGDIDSHMVHADRHLHDHPDRHLH-EHP 942


>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
          Length = 682

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 81  HAQVDLGPDQVPDVVEPVLDHGGPLEGQAPRYHVHVLRQAHG--QQHLRSEHP 233
           H  ++ GP ++P      + H GP +G    + VH  R  H    +HL  EHP
Sbjct: 30  HPFIEQGPVEIP------ISHSGPWQGDIDSHMVHADRHLHDHPDRHLH-EHP 75


>SB_52551| Best HMM Match : NUC130_3NT (HMM E-Value=6.4)
          Length = 363

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 284 IFAYHTGLAK-WIEIGNSGVFRPEMLLPMGLPEDVNVIAWGLSLE 153
           I+  + GLA+ W+ + N  VFRP+ +  +G  E V  +   L LE
Sbjct: 220 IYTSNPGLAEGWVAVNNKVVFRPDSMDSLG-KEQVGFLLDPLGLE 263


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 100  GPTRSRMLLSPYLIMVGRSRDRPHAITFTSSGRPMGSSISGLNTPELPISI 252
            GP + +  L   L+  G SR    +  FTS+  P     S  +TP+ P+++
Sbjct: 1291 GPAKRQQSLGISLLQTGPSRSALPSSFFTSTPMPGTPRTSERSTPDTPLNL 1341


>SB_20967| Best HMM Match : FDX-ACB (HMM E-Value=2.2e-07)
          Length = 318

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 473 VFRNETLDATHLAEFHQVEGV 411
           V+R + +D+ H   FHQ+EGV
Sbjct: 183 VYRRDEIDSCHYPVFHQMEGV 203


>SB_45720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = -2

Query: 216 DAAAHGPA*GRERDSVGPVPRAAHHDQVRAQQHPGPGRAQGRPAHGLQQP 67
           +  AH P    E +  G  P   HH++     HP PG+       G+  P
Sbjct: 131 ERGAHPPGQHHEEEERGAHPPGQHHEEEERGVHP-PGQHHEEEERGVHPP 179


>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3408

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 284 IFAYHTGLAK-WIEIGNSGVFRPEMLLPMGLPEDVNVIAWGLSLE 153
           I+  + GLA+ W+ + N  VFRP+ +  +G  E V  +   L LE
Sbjct: 4   IYTSNPGLAEGWVAVNNKVVFRPDSMDSLG-KEQVGFLLDPLGLE 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,342,381
Number of Sequences: 59808
Number of extensions: 490529
Number of successful extensions: 1414
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)