Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H09
         (794 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative / ...    64   1e-10
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ...    64   1e-10
At1g32190.1 68414.m03959 expressed protein                             32   0.50 
At3g06030.1 68416.m00688 NPK1-related protein kinase, putative (...    29   2.7  
At5g08280.1 68418.m00975 hydroxymethylbilane synthase / porphobi...    28   6.2  
At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E...    28   6.2  
At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E...    28   6.2  
At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E...    28   6.2  
At4g20230.1 68417.m02956 terpene synthase/cyclase family protein...    28   8.2  
At2g19660.1 68415.m02297 DC1 domain-containing protein contains ...    28   8.2  

>At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative /
           eEF-1B gamma, putative similar to elongation factor 1B
           gamma GI:3868758 from [Oryza sativa]
          Length = 413

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 35/121 (28%), Positives = 56/121 (46%)
 Frame = -3

Query: 693 PRTISILYAEYKYPRXLXKVFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVW 514
           P   S+ + +YKY       F++ N + G  QR+D  RK +F  + + G +    + G+W
Sbjct: 295 PEGYSLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLW 354

Query: 513 VWRGKELVFPLSSDWQVDYESYDWKKLDPSSEETKKLVQDYFSWNGTDKDGRKFNQGKIF 334
           ++RG E+      D   D E Y+W K+D S E  K+ V      +    +G      K F
Sbjct: 355 LFRGPEIP-KFIMDEVYDMELYEWTKVDISDEAQKERVSQMIE-DAEPFEGEALLDAKCF 412

Query: 333 K 331
           K
Sbjct: 413 K 413


>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
           eEF-1B gamma, putative Similar to elongation factor
           1-gamma (gb|EF1G_XENLA). ESTs
           gb|T20564,gb|T45940,gb|T04527 come from this gene
          Length = 414

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 35/121 (28%), Positives = 56/121 (46%)
 Frame = -3

Query: 693 PRTISILYAEYKYPRXLXKVFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVW 514
           P   S+ + +YKY       F++ N + G  QR+D  RK +F  + + G +    + G+W
Sbjct: 296 PEGYSLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLW 355

Query: 513 VWRGKELVFPLSSDWQVDYESYDWKKLDPSSEETKKLVQDYFSWNGTDKDGRKFNQGKIF 334
           ++RG E+      D   D E Y+W K+D S E  K+ V      +    +G      K F
Sbjct: 356 LFRGPEIP-KFIMDEVYDMELYEWTKVDISDEAQKERVSQMIE-DAEPFEGEALLDAKCF 413

Query: 333 K 331
           K
Sbjct: 414 K 414


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = -1

Query: 584 CANRLSHPSACLVKTTIP-PSLECGCGAERSSCSRC 480
           C + L  PS    K   P PS  CGCG     C +C
Sbjct: 296 CCSGLCRPSCSCPKPRCPKPSCSCGCGCGDCGCFKC 331


>At3g06030.1 68416.m00688 NPK1-related protein kinase, putative
           (ANP3) similar to protein kinase [Nicotiana tabacum]
           gi|456309|dbj|BAA05648; identical to cDNA NPK1-related
           protein kinase 3 GI:2342426
          Length = 651

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 422 ARRPRNLSRTTSRGTEPTKTVESSTRARYSSEC 324
           ++R  N SR    GTEPT+  ES+ +   +S C
Sbjct: 580 SKRTLNTSRVMQSGTEPTQVNESTKKGVNNSRC 612


>At5g08280.1 68418.m00975 hydroxymethylbilane synthase /
           porphobilinogen deaminase, chloroplast /
           pre-uroporphyrinogen synthase identical to SP|Q43316
          Length = 382

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 310 LDVGRHSLEYL-ALVELSTVFVGSVPREVVLDKFLGLLARRIQFLPVVGLVVHLPIRRQR 486
           +D+  HS++ +   +   T+   ++PRE V D F+ L A  +  LP   +V    +RR+ 
Sbjct: 148 IDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFICLTAATLAELPAGSVVGTASLRRKS 207

Query: 487 E 489
           +
Sbjct: 208 Q 208


>At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E2;
           identical to gi:2689242, SP:P42745
          Length = 152

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 491 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 604
           +  +P    T   V  +  PN   D   CL IL N W+
Sbjct: 60  SEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 97


>At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E2;
           identical to gi:431259, SP:P25865
          Length = 152

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 491 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 604
           +  +P    T   V  +  PN   D   CL IL N W+
Sbjct: 60  SEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 97


>At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E2;
           identical to gi:431259, SP:P25865
          Length = 152

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 491 TSSFPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 604
           +  +P    T   V  +  PN   D   CL IL N W+
Sbjct: 60  SEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 97


>At4g20230.1 68417.m02956 terpene synthase/cyclase family protein
           vetispiradiene synthase, Hyoscyamus muticus,
           PATX:G763421
          Length = 609

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 787 PKVPSTWMISSGSTPTKTKL 728
           PKV +T+M S GS  TKTK+
Sbjct: 100 PKVKNTFMSSQGSDSTKTKI 119


>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 662

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 221 ENCQHPPIYI*MFL-FCKVFYSYCMKCVYIGWTSVGIHLNIL 343
           E  + PPI+    L F +  Y  C  C Y+G+   G H N L
Sbjct: 2   EKVEVPPIHNHPLLPFTRFSYKACKGCGYVGYIYGGYHCNEL 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,790,837
Number of Sequences: 28952
Number of extensions: 391656
Number of successful extensions: 1057
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)