Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H08
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11040.1 68414.m01265 DNAJ chaperone C-terminal domain-contai...    29   2.6  
At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almo...    29   3.4  
At3g06110.1 68416.m00701 dual specificity protein phosphatase fa...    28   7.9  

>At1g11040.1 68414.m01265 DNAJ chaperone C-terminal
           domain-containing protein contains Pfam profile PF01556:
           DnaJ C terminal region
          Length = 438

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 288 HPFKITIHSHTYNNTIKNEGTRST*RLRLLVNIPKRYAKCTRASGTIQSKCCAW 449
           H F+  I      N  K EG R   R+  LVN P++ ++  R+      K C+W
Sbjct: 385 HGFEKAIKGQGMPNA-KEEGKRGDLRITFLVNFPEKLSEEQRSMAYEVLKDCSW 437


>At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almost
           identical to GB:Q43292
          Length = 95

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 318 TYNNTIK--NEGTRST*RLRLLVNIPKRYAKCTR--ASGTIQSKCCAWKS 455
           TYN ++K     T  T R+R L N+P+R+  C R     T ++K  A  S
Sbjct: 46  TYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95


>At3g06110.1 68416.m00701 dual specificity protein phosphatase
           family protein contains Pfam profile: PF00782 dual
           specificity phosphatase, catalytic domain
          Length = 157

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 181 ITNVFVIECYTRYDKLIEFDNTVMFYCFIG 92
           +  V+  ECY+  D+ I+    V+ +CF+G
Sbjct: 73  VIEVYFDECYSFIDQAIQSGGGVLVHCFMG 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,936,028
Number of Sequences: 28952
Number of extensions: 263551
Number of successful extensions: 579
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)