Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_H07
(778 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 28 0.11
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 27 0.15
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 23 4.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 7.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 7.3
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 27.9 bits (59), Expect = 0.11
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 648 SLQWPDTWVLPSWSTTVRQKLLPAASTRLFRVELETKGVKGVKTSL 511
++ P T V+ TTV LPA+ST + + +E + VKT +
Sbjct: 838 TINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVINDVKTQI 883
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 27.5 bits (58), Expect = 0.15
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Frame = +1
Query: 478 HARRSNEVRTYQRSLHTLNAFRL*LDPEXPRRSRRQQLLTNSSRPAWQHPRVRPLKRWSL 657
H +RT+ R T+N L L P S + + + W PR+R R S
Sbjct: 122 HYTSHQHLRTHLRGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNR-SQ 180
Query: 658 YD-----HHFD*SWL 687
Y+ HH+D WL
Sbjct: 181 YEFLNAIHHYDDIWL 195
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 22.6 bits (46), Expect = 4.2
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 19 FAHVGRQAYGPPDGEWLPLPMDFSNTRCRAKPLPT 123
F H GR PD + + +P + KPLPT
Sbjct: 4 FRHNGRDFEYCPDLDNVTMPETTPRRKKNKKPLPT 38
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 636 PDTWVLPSWSTTVRQKLLP 580
PD +V+PSW + + LP
Sbjct: 286 PDRYVMPSWIKMLFLQWLP 304
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 636 PDTWVLPSWSTTVRQKLLP 580
PD +V+PSW + + LP
Sbjct: 286 PDRYVMPSWIKMLFLQWLP 304
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 636 PDTWVLPSWSTTVRQKLLP 580
PD +V+PSW + + LP
Sbjct: 286 PDRYVMPSWIKMLFLQWLP 304
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 636 PDTWVLPSWSTTVRQKLLP 580
PD +V+PSW + + LP
Sbjct: 286 PDRYVMPSWIKMLFLQWLP 304
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 636 PDTWVLPSWSTTVRQKLLP 580
PD +V+PSW + + LP
Sbjct: 286 PDRYVMPSWIKMLFLQWLP 304
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 636 PDTWVLPSWSTTVRQKLLP 580
PD +V+PSW + + LP
Sbjct: 286 PDRYVMPSWIKMLFLQWLP 304
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 7.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 636 PDTWVLPSWSTTVRQKLLP 580
PD +V+PSW + + LP
Sbjct: 354 PDRYVMPSWIKMLFLQWLP 372
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 7.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 636 PDTWVLPSWSTTVRQKLLP 580
PD +V+PSW + + LP
Sbjct: 354 PDRYVMPSWIKMLFLQWLP 372
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,576
Number of Sequences: 438
Number of extensions: 4273
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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