Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_H07
(778 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03350.1 68416.m00333 short-chain dehydrogenase/reductase (SD... 45 6e-05
At3g03330.1 68416.m00331 short-chain dehydrogenase/reductase (SD... 43 2e-04
At3g06060.1 68416.m00693 short-chain dehydrogenase/reductase (SD... 40 0.001
At1g10310.1 68414.m01161 short-chain dehydrogenase/reductase (SD... 38 0.010
At1g52340.1 68414.m05908 short-chain dehydrogenase/reductase (SD... 36 0.030
At5g50770.1 68418.m06290 short-chain dehydrogenase/reductase (SD... 33 0.16
At5g19200.1 68418.m02286 short-chain dehydrogenase/reductase (SD... 33 0.21
At1g76070.1 68414.m08834 expressed protein 31 0.85
At2g15760.1 68415.m01804 calmodulin-binding protein similar to A... 29 2.6
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa... 29 3.4
At5g10050.1 68418.m01164 short-chain dehydrogenase/reductase (SD... 28 6.0
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate... 28 6.0
At1g62000.1 68414.m06993 expressed protein 28 6.0
At1g49300.1 68414.m05526 Ras-related GTP-binding protein, putati... 28 6.0
At1g32120.1 68414.m03952 expressed protein contains Pfam profile... 28 6.0
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 28 7.9
At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibit... 28 7.9
>At3g03350.1 68416.m00333 short-chain dehydrogenase/reductase (SDR)
family protein contains Pfam profile PF00106: short
chain dehydrogenase
Length = 181
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/65 (35%), Positives = 32/65 (49%)
Frame = -1
Query: 766 DSRPPSIQXTFDVNIXAHXWTVKAFLPTMISQNDGHIVTIASMAGHVGVAKLVDYCSSKA 587
D+ +I TFD+N+ +K P M+ Q GH V I+S AG V Y +SK
Sbjct: 77 DASEETINTTFDINVFGTITLIKLVTPHMLKQGGGHFVVISSAAGKVPSPGQAIYSASKH 136
Query: 586 AACGF 572
A G+
Sbjct: 137 ALHGY 141
>At3g03330.1 68416.m00331 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
Short-chain dehydrogenase/reductase (SDR) superfamily
Length = 328
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/65 (35%), Positives = 32/65 (49%)
Frame = -1
Query: 766 DSRPPSIQXTFDVNIXAHXWTVKAFLPTMISQNDGHIVTIASMAGHVGVAKLVDYCSSKA 587
D+ +++ TFDVN+ K P M+ Q GH V I+S AG V Y +SK
Sbjct: 144 DASEETLKTTFDVNVFGTISLTKLVAPHMLKQGGGHFVVISSAAGKVPSPGQAIYSASKH 203
Query: 586 AACGF 572
A G+
Sbjct: 204 ALHGY 208
>At3g06060.1 68416.m00693 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 326
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = -1
Query: 757 PPSIQXTFDVNIXAHXWTVKAFLPTMISQND---GHIVTIASMAGHVGVAKLVDYCSSKA 587
P ++ T DVN+ +KA LP M ++ D I ++S AG VGV Y +SK
Sbjct: 134 PEDVKFTIDVNLVGSFNVIKAALPAMKARKDRGPASISLVSSQAGQVGVYGYAAYSASKF 193
Query: 586 AACGFDEAXQ 557
G +A Q
Sbjct: 194 GLQGLAQALQ 203
>At1g10310.1 68414.m01161 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 242
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -1
Query: 733 DVNIXAHXWTVKAFLPTMISQNDGHIVTIASMAGHVGVAKLVDYCSSKAAACGFDEA 563
D N+ ++ F+P M+ + G IV ++S G G A + YC+SK A G A
Sbjct: 123 DTNVKGVANVLRHFIPLMLPRKQGIIVNMSSGWGRSGAALVAPYCASKWAIEGLSRA 179
>At1g52340.1 68414.m05908 short-chain dehydrogenase/reductase (SDR)
family protein similar to stem secoisolariciresinol
dehydrogenase GI:13752458 from [Forsythia x intermedia]
Length = 285
Score = 35.9 bits (79), Expect = 0.030
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -1
Query: 745 QXTFDVNIXAHXWTVKAFLPTMISQNDGHIVTIASMAGHVGVAKLVDYCSSKAAACG 575
+ TFDVN+ ++K MI + G IV++ S+ G VG Y SK A G
Sbjct: 126 EMTFDVNVKGAFLSMKHAARVMIPEKKGSIVSLCSVGGVVGGVGPHSYVGSKHAVLG 182
>At5g50770.1 68418.m06290 short-chain dehydrogenase/reductase (SDR)
family protein similar to sterol-binding dehydrogenase
steroleosin GI:15824408 from [Sesamum indicum]
Length = 342
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1
Query: 664 GHIVTIASMAGHVGVAKLVDYCSSKAAACGFDE 566
G IV IAS G++ +L YC+SKAA F E
Sbjct: 177 GRIVVIASGCGYIASPRLSFYCASKAAVIAFYE 209
>At5g19200.1 68418.m02286 short-chain dehydrogenase/reductase (SDR)
family protein similar to follicular variant
translocation protein 1 precursor (FVT-1) SP:Q06136 from
[Homo sapiens]
Length = 331
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -1
Query: 757 PPSIQXTFDVNIXAHXWTVKAFLPTMIS---QNDGHIVTIASMAGHVGVAKLVDYCSSKA 587
P ++ DVN+ +KA LP M + + I ++S AG G+ Y +SK
Sbjct: 132 PEEVKFMIDVNLTGSFNVIKAALPAMKAREGRGPASISLVSSQAGQAGIYGYTAYSASKF 191
Query: 586 AACGFDEAXQ 557
G +A Q
Sbjct: 192 GLQGLAQALQ 201
>At1g76070.1 68414.m08834 expressed protein
Length = 272
Score = 31.1 bits (67), Expect = 0.85
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 688 PTMISQNDGHIVTIASMAGHVGVAKLVDYCSSKAAACGFDEAXQGRARDE 539
PT +S D H VT+ S A + ++ + SS+ A FD A + + +E
Sbjct: 157 PTAVSAADEHPVTVVSTAAVPSLGQMKKFASSRDALGDFDWAVEMKHEEE 206
>At2g15760.1 68415.m01804 calmodulin-binding protein similar to
AR781 GI:1669593 from [Arabidopsis thaliana]; AR781
complements pheromone receptor deficient mutant of
Shizosaccharomyces pombe
Length = 315
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 434 FEFSCGTNLELTSSNMPVDRMKYGHISEVFTPLTPFVSS 550
FEF+ LE TS + + G I + TPLTP VSS
Sbjct: 75 FEFNFSGQLEKTSFSAADELFDGGKIRPLRTPLTPTVSS 113
>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 492
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 80 WTSAIPGAEPSRCLPLSTLSNHNVP 154
W+S +PG E P TL HN+P
Sbjct: 409 WSSGVPGTEQVSTEPDQTLPQHNLP 433
>At5g10050.1 68418.m01164 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198 short
chain dehydrogenase/reductase SDR family
Length = 279
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 751 SIQXTFDVNIXAHXWTVKAFLPTMISQNDGHIVTIASM 638
+++ TF+ N+ +A +P M+S+ G IV + S+
Sbjct: 103 AMENTFNTNVFGSMRMTQAVVPHMVSKKKGKIVNVGSI 140
>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; weak hit to Pfam profile
PF02178: AT hook motif
Length = 1752
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = -3
Query: 116 SGLALHLVLLKSMGNGNHSPSGGPYACLPTWANKKKKK 3
S LAL L+ G ++P G CLP A KKKKK
Sbjct: 571 SYLALQYPLILCYGEDGYTP--GIEKCLPNSAKKKKKK 606
>At1g62000.1 68414.m06993 expressed protein
Length = 148
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +1
Query: 268 LGATGTASGTRPRIS-----SDIHGQGTIHLKGSNTRKKPGIRAKGSLVRIASTTRSA 426
L ATGT T +S ++ G G + +NT + AKG R++ST+ SA
Sbjct: 49 LSATGTTYSTSSVVSYANGFNNPKGPGANSFESANTFTSGQVTAKGRKARVSSTSASA 106
>At1g49300.1 68414.m05526 Ras-related GTP-binding protein, putative
contains Pfam profile: PF00071 Ras family
Length = 206
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +2
Query: 371 LVLERKAH-WCVSRAQHDPPPRFEFSC--GTNLELTSSNMPVDRMKYGHISEVFTPLTPF 541
+V E+KA WC S+ P +E S GTN+E + + MK G E++ P T
Sbjct: 136 VVSEKKARAWCASKGNI---PYYETSAKVGTNVEDAFLCITTNAMKSGEEEEMYLPDTID 192
Query: 542 VSSS 553
V +S
Sbjct: 193 VGTS 196
>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 1206
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 256 SIRALGATGTASGTRPRISSDIHGQGTIHLKGSNTRKKP 372
S A+ + G + PR+S + + ++ + S+TRKKP
Sbjct: 754 SPEAINSRGQKNPPSPRVSKEPYMSSSLSVSSSSTRKKP 792
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 335 VPWPCISELIRGLVPDAVPVAPNARIETPSSAPKIDMKTD 216
V W C+ E + L D + A N E P++APK++ + D
Sbjct: 172 VYWLCLKEEL-SLTVDELTRANNPWKEVPNTAPKVESQND 210
>At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibitor
family protein similar to extensin-like protein [Zea
mays] GI:5917666
Length = 264
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 293 PDAVPVAPNARIETPSSAPKIDMKTDSRPMSLLPP 189
P+A +P A E+ S+AP +K S P SLL P
Sbjct: 90 PEAPVASPEAPAESSSAAPS-GIKVSSSPKSLLNP 123
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,696,922
Number of Sequences: 28952
Number of extensions: 342204
Number of successful extensions: 942
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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