Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_H05
(836 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39937| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74) 31 1.5
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1) 29 3.5
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 29 4.7
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31) 29 6.2
>SB_39937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 34.3 bits (75), Expect = 0.12
Identities = 19/46 (41%), Positives = 22/46 (47%)
Frame = +2
Query: 455 TGTCFSMWTGYGLSTGMLTGNGTAXSTGYGMCFSXG*GAXXGTXXG 592
TG WTG+G TG TG+GT TG+G G G G G
Sbjct: 171 TGHGTGRWTGHG--TGRWTGHGTGRWTGHGTGMGQGVGQGMGQGVG 214
Score = 33.5 bits (73), Expect = 0.22
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +2
Query: 455 TGTCFSMWTGYGLSTGMLTGNGTAXSTGYGMCFSXG*GAXXGTXXG 592
TG WTG+G G G G G GM G G GT G
Sbjct: 187 TGHGTGRWTGHGTGMGQGVGQGMGQGVGQGMGQGMGQGVGQGTGQG 232
Score = 32.3 bits (70), Expect = 0.50
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +2
Query: 455 TGTCFSMWTGYGLSTGMLTGNGTAXSTGYGMCFSXG*GAXXGTXXG 592
TG WTG+G TG TG+GT G G G G G G
Sbjct: 179 TGHGTGRWTGHG--TGRWTGHGTGMGQGVGQGMGQGVGQGMGQGMG 222
>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
Length = 483
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 549 HIPYPVXKAVPFPVNIPVDRPYPVHIEKHVPVH 451
H P+PV V P +PV P PV + VP+H
Sbjct: 212 HHPFPVRVPVRVPFRVPVRVPVPVRVP--VPIH 242
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 519 PFPVNIPVDRPYPVHIEKHVPVHI 448
PFPV +PV P+ V + VPV +
Sbjct: 214 PFPVRVPVRVPFRVPVRVPVPVRV 237
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 591 PXXVPXXAPYPXEKHIPYPVXKAVPFPVNIPVDRPYP 481
P P PYP + PYP P+P P + PYP
Sbjct: 107 PYPPPPNPPYPPPPNAPYPPPPNPPYPP--PPNAPYP 141
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 591 PXXVPXXAPYPXEKHIPYPVXKAVPFPVNIPVDRPYP 481
P P APYP + PYP P+P + + PYP
Sbjct: 115 PYPPPPNAPYPPPPNPPYPPPPNAPYPPS--PNAPYP 149
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 591 PXXVPXXAPYPXEKHIPYPVXKAVPFPVNIPVDRPYP 481
P P APYP + PYP P+P + P P
Sbjct: 131 PYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNP 167
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 579 PXXAPYPXEKHIPYPVXKAVPFPVNIPVDRPYP 481
P PYP + PYP P+P P + PYP
Sbjct: 103 PPPPPYPPPPNPPYPPPPNAPYPP--PPNPPYP 133
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 570 APYPXEKHIPYPVXKAVPFPVNIPVDRPYP 481
APYP + PYP P P P + PYP
Sbjct: 146 APYPPPPNPPYPPPLYPPPPNPPPPNAPYP 175
>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
Length = 284
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -1
Query: 509 LTSPSTGHTQSTSRSTCLCTLRSPYRTQLRY 417
L P+T HT T+ T CT R PYR +RY
Sbjct: 112 LRIPNTLHTTHTAYRT-QCTYRIPYRYHIRY 141
>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
Length = 1604
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Frame = -3
Query: 591 PXXVPXXAPYPXEKHIP--YPVXKAVPFPVNIP----VDRPYPV--HIEKHVPV 454
P +P P P H+P P+ + VP +P ++RP P H+ H+P+
Sbjct: 491 PTPLPLERPVPAVTHLPTDLPLERPVPAVTRLPTPLLLERPVPAVTHLPAHLPL 544
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -3
Query: 582 VPXXAPYPXEKHIPYPVXKAVPFPVNIPVDRPYP--VHIEKHVPV 454
VP P + +PV P ++P++RP P + H+P+
Sbjct: 532 VPAVTHLPAHLPLEWPVPAVTRLPTHLPLERPVPAVTRLPTHLPL 576
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 15/62 (24%)
Frame = -3
Query: 591 PXXVPXXAPYPXEK---HIPYPVX-----KAVPFPVNIPVDRP-------YPVHIEKHVP 457
P +P +P EK PYPV K +P+PV +PV +P YPV + +
Sbjct: 458 PFPIPVHSPPQIEKVPIPFPYPVPSPPQIKPMPYPVPVPVRQPPMIQRFYYPVPVSRPGQ 517
Query: 456 VH 451
+H
Sbjct: 518 IH 519
>SB_54456| Best HMM Match : EGF (HMM E-Value=2.3e-31)
Length = 491
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 591 PXXVPXXAPYPXEKHIPYPVXKAVPFPVNIPVDRPYPVHI 472
P V P + IP+PV V P++ V PYPV +
Sbjct: 267 PFPVMVNRPVHHTERIPFPVPFVVNRPIHHTVQVPYPVPV 306
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,318,979
Number of Sequences: 59808
Number of extensions: 181670
Number of successful extensions: 686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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