Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H03
         (877 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui...    28   7.1  
At4g13960.1 68417.m02159 F-box family protein contains F-box dom...    28   9.4  

>At5g02880.1 68418.m00231 HECT-domain-containing protein /
           ubiquitin-transferase family protein /
           armadillo/beta-catenin-like repeat-containing protein
           similar to SP|Q14669 Thyroid receptor interacting
           protein 12 (TRIP12) {Homo sapiens}; contains Pfam
           profiles PF00632: HECT-domain (ubiquitin-transferase),
           PF00514: Armadillo/beta-catenin-like repeat
          Length = 1502

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 239 LVPEVPVKRRLLNPQPFRQFACRQTVYADLXSTGPGXARI 358
           +V E+P  +R  N Q FR      +V A    T PG   +
Sbjct: 11  VVEELPADKRACNSQDFRPSTSGSSVQAQANDTNPGHENV 50


>At4g13960.1 68417.m02159 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 434

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 720 RTRLPPICVNGAELLRHFGKSR*FGAKQL 806
           + R+P +C   AE++ H+GKS  F  + L
Sbjct: 394 KLRVPQVCEFIAEMMEHYGKSSSFNVQLL 422


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,670,196
Number of Sequences: 28952
Number of extensions: 384145
Number of successful extensions: 867
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)