Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_H02
(770 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44033| Best HMM Match : SRCR (HMM E-Value=1.3) 31 1.0
SB_17602| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 31 1.4
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 29 3.1
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098) 29 4.2
SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014) 28 7.3
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_59481| Best HMM Match : Exc (HMM E-Value=5.1) 28 9.6
SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013) 28 9.6
SB_29540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_44033| Best HMM Match : SRCR (HMM E-Value=1.3)
Length = 112
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 759 TKSKYQSTXPTMYTCLSLXPVHVKSPXPVTVHKPVPYEVKVP 634
T +Y + P YT P + P P T +P+PY + P
Sbjct: 3 TPFRYTTRRPFPYTTRRPFPYTTRRPFPYTTRRPLPYTTRRP 44
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = -3
Query: 747 YQSTXPTMYTCLSLXPVHVKSPXPVTVHKPVPYEVKVP 634
Y + P YT P + P P T +P PY + P
Sbjct: 15 YTTRRPFPYTTRRPFPYTTRRPLPYTTRRPFPYTTRPP 52
>SB_17602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -3
Query: 762 LTKSKYQSTXPTMYTCLSLXPVHVKSPXPVTVHKPVPYEVKVPV 631
L+ SK +T T+ C+++ + VKS P + VPY VK+PV
Sbjct: 15 LSGSKIATT--TVILCIAIPVIAVKSTIPWVTQR-VPYNVKIPV 55
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -1
Query: 626 SPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTRKFK 459
SP R K RSP RSP K + + + S +P ++ K+ L+ P RS ++
Sbjct: 195 SPFRHKSRSPFRSPQKERIPHQSPERLPSWSPVRQSPFNKTHRRLSPPRRSPSPYR 250
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 10/66 (15%)
Frame = -1
Query: 641 RSPLTSPTRSK*RSPIRSPLKCQYQNLTK--SSRKSLTP--------SKRKCLMKSKCLL 492
RS SP +S+ RS RSP + +Y++ ++ R+S +P S+R+C KS +
Sbjct: 321 RSRSRSP-KSRLRSRSRSPYRIRYRSRSRPPRGRRSQSPRRRRTRSRSRRRCRSKSSSIA 379
Query: 491 TSPTRS 474
+SP +S
Sbjct: 380 SSPDKS 385
>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
Length = 620
Score = 29.1 bits (62), Expect = 4.2
Identities = 25/67 (37%), Positives = 29/67 (43%)
Frame = -1
Query: 671 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLL 492
P TS P SPLTSP S SP SPL + S S +P + S L
Sbjct: 172 PLTSSSPLTSSSPLTSP--SPLTSP--SPLTSSSPLTSSSPLTSSSPLTSSSPLTSSSPL 227
Query: 491 TSPTRST 471
TSP+ T
Sbjct: 228 TSPSPLT 234
>SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014)
Length = 351
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -1
Query: 650 TKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSK 501
TK + P T T++K RS R LKC L + K + KRK SK
Sbjct: 62 TKSKEPETDGTQNK-RSRKRKLLKCDQLLLPDTRLKPIGSKKRKVKQSSK 110
>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 28.3 bits (60), Expect = 7.3
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = -3
Query: 234 FVVVFCVLIGCCEHYL 187
F++V+C+++GCC YL
Sbjct: 3 FMLVWCIVVGCCMAYL 18
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -1
Query: 671 PYTSQCPTKLR-SPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRK--SLTPSKRKCLMK 507
P S P + R SP SP R + RSP SP + L RK S PS R+ K
Sbjct: 913 PTPSPPPRRRRKSPSPSPPRRRRRSPSNSPPPMRSSPLPPPQRKRASTPPSPRRARRK 970
>SB_59481| Best HMM Match : Exc (HMM E-Value=5.1)
Length = 265
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 225 VFCVLIGCCEHYLRRR 178
VFCV+ G C+H LR R
Sbjct: 51 VFCVVAGVCQHVLRSR 66
>SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)
Length = 340
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -1
Query: 671 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLL 492
P+ S PTK P S +K P +S + TKS++ + + K ++
Sbjct: 158 PFKSTKPTKSTKPTKSTKATKSTKPTKSTKPTKPTKPTKSTKPTKSTKPTKSTKPTESKP 217
Query: 491 TSPT 480
T+PT
Sbjct: 218 TAPT 221
>SB_29540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 225 VFCVLIGCCEHYLRRR 178
VFCV+ G C+H LR R
Sbjct: 11 VFCVVAGVCQHVLRSR 26
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,153,602
Number of Sequences: 59808
Number of extensions: 309223
Number of successful extensions: 995
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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