Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H02
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    38   0.006
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    31   1.1  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    31   1.1  
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id...    29   4.5  
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id...    29   4.5  
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id...    29   4.5  
At1g76930.2 68414.m08956 proline-rich extensin-like family prote...    29   4.5  
At1g76930.1 68414.m08955 proline-rich extensin-like family prote...    29   4.5  

>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
 Frame = -1

Query: 641 RSPLTSPTRSK*RSPIRSPLKCQYQNLTKS----SRKSLTPSKRKCLMKSKCLLTSPTRS 474
           RSP  SP RS  RS  RSP++   ++L++S    SR+SL+ S  +   KS  +  SP RS
Sbjct: 521 RSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKS--VSRSPVRS 578

Query: 473 TRK 465
           +RK
Sbjct: 579 SRK 581



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
 Frame = -1

Query: 662 SQCPTKL------RSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSK 501
           S+ PT+L      RSP+ SP +S  RSP+RS  K   ++  +SSR+ ++ S  +   KS 
Sbjct: 548 SRSPTRLSRRSLSRSPIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKS- 606

Query: 500 CLLTSPTRSTRK 465
            +  SP R +R+
Sbjct: 607 -VSRSPIRLSRR 617



 Score = 34.3 bits (75), Expect = 0.090
 Identities = 23/75 (30%), Positives = 41/75 (54%)
 Frame = -1

Query: 689 KALXQ*PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLM 510
           ++L + P  S   +  RSP+ S  +S  RSP+RS  +   ++  +SSRKS+  S+    +
Sbjct: 557 RSLSRSPIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKSV--SRSPIRL 614

Query: 509 KSKCLLTSPTRSTRK 465
             + +  SP R +R+
Sbjct: 615 SRRSISRSPIRLSRR 629



 Score = 31.9 bits (69), Expect = 0.48
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 641 RSPLT-SPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTRK 465
           R PL  S  RS  RSP+RS  +   ++  + SR+SL+ S  +  +  + L  SP RS RK
Sbjct: 512 RGPLRRSSRRSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTR--LSRRSLSRSPIRSPRK 569



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/69 (33%), Positives = 35/69 (50%)
 Frame = -1

Query: 671 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLL 492
           P  S   +  RSP+    RS  RSP R   +   ++  +S RKS++ S  +   KS  + 
Sbjct: 527 PVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKSVSRSPVRSSRKS--VS 584

Query: 491 TSPTRSTRK 465
            SP RS+R+
Sbjct: 585 RSPVRSSRR 593


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = -1

Query: 620 TRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTRK 465
           +RS+ RS   SP++ + +  + SS +S   SKRK   K K    SP +S R+
Sbjct: 833 SRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSRRR 884


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = -1

Query: 620 TRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTRK 465
           +RS+ RS   SP++ + +  + SS +S   SKRK   K K    SP +S R+
Sbjct: 803 SRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSRRR 854


>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 249

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -1

Query: 671 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSR 546
           P  S+ P + RSP  S +RS+  S  RSP++ + +++ + SR
Sbjct: 112 PVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSR 153


>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 260

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -1

Query: 671 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSR 546
           P  S+ P + RSP  S +RS+  S  RSP++ + +++ + SR
Sbjct: 123 PVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSR 164


>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 290

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -1

Query: 671 PYTSQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSR 546
           P  S+ P + RSP  S +RS+  S  RSP++ + +++ + SR
Sbjct: 153 PVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSR 194


>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 256

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 486 PYPVYKEVQVPLVKEVPYPVKYHVP 412
           P PVYK    P+ K  P PVK++ P
Sbjct: 87  PPPVYKSPPPPVYKSPPPPVKHYSP 111


>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 293

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 486 PYPVYKEVQVPLVKEVPYPVKYHVP 412
           P PVYK    P+ K  P PVK++ P
Sbjct: 87  PPPVYKSPPPPVYKSPPPPVKHYSP 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,721,121
Number of Sequences: 28952
Number of extensions: 211475
Number of successful extensions: 633
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)