Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_H01
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing p...    31   0.64 
At2g33260.1 68415.m04077 tryptophan/tyrosine permease family pro...    30   1.5  
At2g28150.1 68415.m03419 expressed protein                             29   2.6  
At2g45430.1 68415.m05651 DNA-binding protein-related contains Pf...    29   3.4  
At3g61690.1 68416.m06913 expressed protein                             29   4.5  
At3g48450.1 68416.m05289 nitrate-responsive NOI protein, putativ...    29   4.5  
At2g28270.1 68415.m03431 DC1 domain-containing protein contains ...    28   6.0  
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ...    28   7.9  
At2g25450.1 68415.m03048 2-oxoglutarate-dependent dioxygenase, p...    28   7.9  
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1...    28   7.9  

>At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing
           protein similar to brahma associated protein 60 kDa
           [Drosophila melanogaster] GI:3378134, SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin D1 [Homo sapiens] GI:4566530; contains Pfam
           profile PF02201: BAF60b domain of the SWIB complex
          Length = 534

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 644 GNXGP--PSETRRGNNHTRRFQHEKP*ERRGAPADARALQPRR 522
           G  GP  PS T  G+ + +RFQ + P    GAPA    + P R
Sbjct: 90  GGLGPSSPSLTTPGSLNMKRFQQKPPMRPPGAPASNNTISPMR 132


>At2g33260.1 68415.m04077 tryptophan/tyrosine permease family
           protein contains Pfam profile PF03222:
           Tryptophan/tyrosine permease family
          Length = 436

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = +3

Query: 351 AANCSEGSAPYRFRFSSXITAYLPWRPKTSFPQPLATQFLLVSKLSPGSGR 503
           + N S  SA   F FS+  T+ + +    SFP+ L   + LVSK S G+GR
Sbjct: 275 SVNPSALSAVQGFAFSALATSLIGYA--VSFPKQLLDTWKLVSKQSNGNGR 323


>At2g28150.1 68415.m03419 expressed protein
          Length = 540

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 347 SEPDLGPGSVCTTVSCAPGDRRAGTLARATVEPPLA 240
           SEP+    ++ +  SCA  +R +  ++R +V PP +
Sbjct: 252 SEPETSENNLVSEASCAGKERESAEISRNSVSPPFS 287


>At2g45430.1 68415.m05651 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 317

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
 Frame = +1

Query: 169 SFCPHPMPQATSPANL*RLSPMGQARGGSTVA--LASVPALLSPGAHETVVQTEPGPKSG 342
           SF P P P A S   +      GQ  GGS V   +AS P ++   +           +  
Sbjct: 186 SFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLMASGPVVIMAASFGNAAYERLPLEED 245

Query: 343 SLQQRIAARVRHHID 387
             +++ A  V ++ID
Sbjct: 246 DQEEQTAGAVANNID 260


>At3g61690.1 68416.m06913 expressed protein
          Length = 1303

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 692  RAIXGREPENGHPDHQGNXGPPSETR-RGNNHTRRFQHE-KP*ERR 561
            R   G +  + H D +GN    S+TR  G NH  R Q + KP  R+
Sbjct: 1126 RGNYGHDRTDHHSDREGNWNAGSKTRGSGRNHNNRNQADNKPISRQ 1171


>At3g48450.1 68416.m05289 nitrate-responsive NOI protein, putative
           similar to nitrate-induced NOI protein [Zea mays]
           GI:2642213
          Length = 89

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -1

Query: 144 GPHEVLGRPEDERVGLRN---HHLHYLRHSQNKNVRK 43
           GP  ++  P +E     N   HH H+ RHSQ    +K
Sbjct: 47  GPESIVSPPRNEEPPKNNNNHHHNHHTRHSQTPRSKK 83


>At2g28270.1 68415.m03431 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 248

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 691 GQXEGESRRMDTQTIKEMXDHQVRLVEEIIIHE 593
           G+ EGES  + T  IK + + +  + E  IIH+
Sbjct: 192 GEEEGESSSLSTSRIKSLMEAEKEMREMAIIHQ 224


>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
           NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
           protein NAP57) {Rattus norvegicus}; contains Pfam
           profiles PF01509: TruB family pseudouridylate synthase
           (N terminal domain), PF01472: PUA domain; supporting
           cDNA gi|8901185|gb|AF234984.2|AF234984
          Length = 565

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 428 TKDVLPPAVGDAVLAGVEAIPRVREADHVD-VLGEVEGRVH 547
           +++V+ P  GDA++AG  A P   +AD  +   GE   R H
Sbjct: 404 SRNVVLPTGGDAIIAGAAAAPEEIKADAENGEAGEARKRKH 444


>At2g25450.1 68415.m03048 2-oxoglutarate-dependent dioxygenase,
           putative similar to 2A6 (GI:599622) and tomato ethylene
           synthesis regulatory protein E8 (SP|P10967)
          Length = 359

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 404 YHRVSALETKDVLPPAVGDAVLAGVEAIPRVREADHVDV 520
           Y R S L+  D +   V   V AGV  +PR+    HV+V
Sbjct: 5   YDRASELKAFDEMKIGVKGLVDAGVTKVPRIFHNPHVNV 43


>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
            [Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
            Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin
            family
          Length = 1919

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = -3

Query: 718  RSHXLQVRPGQXEGESRRMDTQTIKEMXDHQVRLVEEIIIHEDFNTKSLKNDVALLRMHA 539
            R H +   P + E   +++  +  KEM DH +  +EE    E   TK +  ++A  +   
Sbjct: 1606 RPHLVIRPPTEREQPQKKLVIKRSKEMNDHDMSSLEESPRFESRKTKRMA-ELAGFQRQQ 1664

Query: 538  PFNLAEH 518
             F L+E+
Sbjct: 1665 SFRLSEN 1671


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,545,737
Number of Sequences: 28952
Number of extensions: 385770
Number of successful extensions: 1382
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)