Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_G16
(832 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 34 0.13
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote... 31 1.2
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 30 1.6
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 29 2.9
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 29 2.9
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 29 3.8
At3g26510.4 68416.m03309 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.8
At3g26510.3 68416.m03306 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.8
At3g26510.2 68416.m03307 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.8
At3g26510.1 68416.m03308 octicosapeptide/Phox/Bem1p (PB1) domain... 29 3.8
At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family... 29 3.8
At3g08670.1 68416.m01007 expressed protein 29 5.0
At1g25550.1 68414.m03172 myb family transcription factor contain... 29 5.0
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 28 6.6
At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic... 28 6.6
At1g47660.1 68414.m05295 hypothetical protein 28 6.6
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 28 8.7
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 28 8.7
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 28 8.7
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = -1
Query: 658 SPYPVKYTLXAQCPSMSRASSVPRQGTSARPLP----PSRSTSRTQ*KRPCRSQLTSPST 491
SP P K ++ S SR+ S PR + +R LP PSRS R++ + RS++ +P T
Sbjct: 13 SPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGT 72
>At2g40040.1 68415.m04920 defective chloroplasts and leaves
protein-related / DCL protein-related similar to DCL
protein, chloroplast precursor (Defective chloroplasts
and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
esculentum]
Length = 839
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = -1
Query: 628 AQCPSMSRASSVPRQGTSARPLPPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLC- 452
AQ S S+ S + + ++ S+S S++Q + +SQ SPS TQS S++
Sbjct: 768 AQAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQSPSQTQAQAQ 827
Query: 451 --TLRSPYRTQ 425
+ +SP +TQ
Sbjct: 828 SPSSQSPSQTQ 838
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = -1
Query: 658 SPYPVKYTLXAQCPSMSRASSVPRQGTSARPLP----PSRSTSRTQ*KRPCRSQLTSPST 491
SP P K ++ S SR+ S PR + +R LP PSRS R++ R S++ +P T
Sbjct: 13 SPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSR-SRSRGSEVENPGT 71
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +1
Query: 454 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 543
TGT TG G TG TG GT TG G
Sbjct: 138 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 167
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +1
Query: 454 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 543
TGT TG G TG TG GT TG G
Sbjct: 138 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 167
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 29.1 bits (62), Expect = 3.8
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 1/97 (1%)
Frame = -1
Query: 724 PXQIPNQXXPRREAXPXPGRKTSPYPVKYTLXAQCPSMSRASSVPRQGTSAR-PLPPSRS 548
P P++ P R + S P+ +T A PS + + S S + P P S S
Sbjct: 162 PASAPSKSQPPRSSVSPAQPPKSSSPISHT-PALSPSHATSHSPATPSPSPKSPSPVSHS 220
Query: 547 TSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSP 437
S + P S +PS + S S SP
Sbjct: 221 PSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSP 257
>At3g26510.4 68416.m03309 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -1
Query: 670 GRKTSPYPVKY---TLXAQCPSMSRASSVPRQGTSAR-PLPPSRSTSRTQ*KRPC 518
G K SP P+ T + + S SS PR + ++ PLPPS T K PC
Sbjct: 120 GSKKSPPPLALPSSTTTSSSSTTSSTSSSPRSPSLSKPPLPPSPPRITTVTKNPC 174
>At3g26510.3 68416.m03306 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 218
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -1
Query: 670 GRKTSPYPVKY---TLXAQCPSMSRASSVPRQGTSAR-PLPPSRSTSRTQ*KRPC 518
G K SP P+ T + + S SS PR + ++ PLPPS T K PC
Sbjct: 142 GSKKSPPPLALPSSTTTSSSSTTSSTSSSPRSPSLSKPPLPPSPPRITTVTKNPC 196
>At3g26510.2 68416.m03307 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -1
Query: 670 GRKTSPYPVKY---TLXAQCPSMSRASSVPRQGTSAR-PLPPSRSTSRTQ*KRPC 518
G K SP P+ T + + S SS PR + ++ PLPPS T K PC
Sbjct: 120 GSKKSPPPLALPSSTTTSSSSTTSSTSSSPRSPSLSKPPLPPSPPRITTVTKNPC 174
>At3g26510.1 68416.m03308 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -1
Query: 670 GRKTSPYPVKY---TLXAQCPSMSRASSVPRQGTSAR-PLPPSRSTSRTQ*KRPC 518
G K SP P+ T + + S SS PR + ++ PLPPS T K PC
Sbjct: 120 GSKKSPPPLALPSSTTTSSSSTTSSTSSSPRSPSLSKPPLPPSPPRITTVTKNPC 174
>At2g28240.1 68415.m03428 hydroxyproline-rich glycoprotein family
protein
Length = 660
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Frame = -1
Query: 751 P*GSMGQXYPXQIPNQXXPRREAXPXPGRKT-SPYPVKYTLXAQCPSMSRASSVPRQGTS 575
P S P + P + P P T P P+ + + +++++PR +
Sbjct: 341 PMNSTAPPRPSVTAAEATPPNLSAPLPHCNTPQPSPISQQAAVESNTQMQSTALPRPSVT 400
Query: 574 ARPLPPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTS 470
A P + S T RP Q + S + ST+
Sbjct: 401 AEARPLHQPHSNTSQPRPIPQQALAQSNTNITSTA 435
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -1
Query: 658 SPYPVKYTLXAQCPSMSRASSVP-RQGTSARPLPPSRSTSRTQ*KRPCRSQLTSPST 491
SP + T A S R SS R +SARP P+R++S ++ P R + S S+
Sbjct: 175 SPSSILNTSSASVSSYIRPSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSS 231
>At1g25550.1 68414.m03172 myb family transcription factor contains
Pfam domain, PF00249: Myb-like DNA-binding domain
Length = 344
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 562 PPSRSTSRTQ*KRPCRSQLTSPSTGHT 482
PP STS + R C+S TS +T HT
Sbjct: 311 PPQSSTSGERSNRGCKSPATSSTTTHT 337
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 28.3 bits (60), Expect = 6.6
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = -1
Query: 745 GSMGQXYPXQIPNQXXPRREAXPXPGRKTSPYPVKYTLXAQCPSMSRAS--SVPRQGTSA 572
GS+G+ P + ++ P R R S P++ + + S +R S S+ R +
Sbjct: 508 GSLGRG-PLRRSSRRSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIRS 566
Query: 571 RPLPPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 419
SRS R+ K RS + S ++S RS+ RSP R R
Sbjct: 567 PRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKSVSRSPIRLSRR 617
>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
to gi|10880497|gb|AAG24278; supported by Ceres cDNA
265772
Length = 127
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 715 IPNQXXPRREAXPXPGRKTSPYPVKYTLXAQCPSMSRASSVPRQGTSARPLPPSRST 545
+P+ P R A P P +P P P A S P +++ P PP+ T
Sbjct: 33 LPSPAQPPRTAAPTPSITPTPTPTPSATPTAAPVSPPAGS-PLPSSASPPAPPTSLT 88
>At1g47660.1 68414.m05295 hypothetical protein
Length = 275
Score = 28.3 bits (60), Expect = 6.6
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Frame = -1
Query: 712 PNQXXPRREAXPXPGRKTSPYPVKYTL--XAQCPSMSRAS---SVPRQGTSARPLPPSRS 548
P P R P P R T+P PV T A P A+ +VP A P +
Sbjct: 26 PRAAPPARPTTPPPARPTTPPPVWPTTPPPAGAPVAVPAAAHVAVPAAAPVAAPAELGET 85
Query: 547 TS-RTQ*KRPCRSQLTSPSTGHTQSTSR 467
TS RT RS L +T++T R
Sbjct: 86 TSRRTNLDEVIRSFLDRLDLQNTRTTER 113
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -1
Query: 655 PYPVKYTLXAQCPSMSRASSVPRQGTSARPLPPSRSTSRTQ*KRPCRSQLTSP 497
P P + PSM ++ + PL PS+S T+ + P SQ +SP
Sbjct: 175 PPPQEAKTPPSSPSMMLNATEEFESQPKPPLLPSKSIDETRLRSPLMSQASSP 227
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = -1
Query: 658 SPYPVKYTLXAQCPSMSRASSVPRQGTSARPLPPSRSTSRTQ*KRPCRSQLTSPSTGHTQ 479
SP PV T ++ SV G ++PL P + S T P +QL +T +
Sbjct: 205 SPAPVSLTETPNRTGIASTISVINNGLISKPLTPVGTMSSTS-PLPVVNQLPVNATSNAS 263
Query: 478 STSRSTCLCTLRSPYRTQ 425
++ T ++P TQ
Sbjct: 264 PSTPITASLVAQAPTVTQ 281
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = -1
Query: 658 SPYPVKYTLXAQCPSMSRASSVPRQGTSARPLPPSRSTSRTQ*KRPCRSQLTSPSTGHTQ 479
SP PV T ++ SV G ++PL P + S T P +QL +T +
Sbjct: 466 SPAPVSLTETPNRTGIASTISVINNGLISKPLTPVGTMSSTS-PLPVVNQLPVNATSNAS 524
Query: 478 STSRSTCLCTLRSPYRTQ 425
++ T ++P TQ
Sbjct: 525 PSTPITASLVAQAPTVTQ 542
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,980,649
Number of Sequences: 28952
Number of extensions: 199010
Number of successful extensions: 742
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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