Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_G12
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   7.2  
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...    28   9.5  

>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 427 RARPSATR-PPLAVRRSLGDRARRSSLGASVPPSRRRDS 314
           R  PSA++ PP   RR    ++R  +    +PP+RRR S
Sbjct: 376 RRSPSASKSPPAPRRRRSPSKSRSPAPKREIPPARRRRS 414


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
           protein.
          Length = 852

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 261 SPNRHCTLVDTLHVPPPQLSRRRDGGTLAPSDDRRARS 374
           SPN+H  L  T    P  L+   +GGT++  D+ +AR+
Sbjct: 589 SPNKHNRLHCTAQPMPDGLADDIEGGTVSARDEFKARA 626


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,828,389
Number of Sequences: 27780
Number of extensions: 214218
Number of successful extensions: 659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)