Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_G04
         (889 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9DWH8 Cluster: Pr2; n=1; Rat cytomegalovirus Maastrich...    34   5.6  
UniRef50_Q62CR7 Cluster: Mulitcopper oxidase domain protein; n=1...    34   5.6  
UniRef50_A5NZ47 Cluster: LigA; n=1; Methylobacterium sp. 4-46|Re...    34   5.6  
UniRef50_Q7SFN5 Cluster: pH-response regulator protein palI/rim-...    34   5.6  
UniRef50_UPI0000E1FA6C Cluster: PREDICTED: hypothetical protein;...    33   7.4  
UniRef50_P87912 Cluster: ICP0B; n=1; Human herpesvirus 1|Rep: IC...    33   7.4  

>UniRef50_Q9DWH8 Cluster: Pr2; n=1; Rat cytomegalovirus
            Maastricht|Rep: Pr2 - Rat cytomegalovirus (strain
            Maastricht)
          Length = 1240

 Score = 33.9 bits (74), Expect = 5.6
 Identities = 25/63 (39%), Positives = 27/63 (42%)
 Frame = +2

Query: 107  RNDKGRECEFGGRSRGGGAANPTTHVVTDRSPCRRAGGAGNCRPPLTCSGGYRKRGCITG 286
            R + G     GG S GG A       V DR    R  GA   R P    GG R+RG  T 
Sbjct: 980  REEVGDAATRGGESGGGRAGGGR---VRDRG--LRTAGAAEPRHPQRPEGGRRRRGQATE 1034

Query: 287  RPG 295
            RPG
Sbjct: 1035 RPG 1037


>UniRef50_Q62CR7 Cluster: Mulitcopper oxidase domain protein; n=18;
           Burkholderia|Rep: Mulitcopper oxidase domain protein -
           Burkholderia mallei (Pseudomonas mallei)
          Length = 535

 Score = 33.9 bits (74), Expect = 5.6
 Identities = 21/74 (28%), Positives = 29/74 (39%)
 Frame = +2

Query: 140 GRSRGGGAANPTTHVVTDRSPCRRAGGAGNCRPPLTCSGGYRKRGCITGRPGNTAXXXXX 319
           G++R G   +P    +  RSPCRRA  AG      T +GG      +   P + A     
Sbjct: 10  GKTRAGHEPHPPPAALGSRSPCRRAAAAGAAE---TNTGGLDMNPAVDPSPLSRAAQALA 66

Query: 320 XXXXXXXXCMGRCT 361
                    +G CT
Sbjct: 67  LASIGGALALGACT 80


>UniRef50_A5NZ47 Cluster: LigA; n=1; Methylobacterium sp. 4-46|Rep:
           LigA - Methylobacterium sp. 4-46
          Length = 593

 Score = 33.9 bits (74), Expect = 5.6
 Identities = 19/46 (41%), Positives = 21/46 (45%)
 Frame = +2

Query: 137 GGRSRGGGAANPTTHVVTDRSPCRRAGGAGNCRPPLTCSGGYRKRG 274
           GG  RG GA         D    R AGG    RPP   +GG R+RG
Sbjct: 397 GGGMRGPGAGGRPGERRRDPRAARAAGGGERPRPPGAGAGGARRRG 442


>UniRef50_Q7SFN5 Cluster: pH-response regulator protein palI/rim-9;
           n=1; Neurospora crassa|Rep: pH-response regulator
           protein palI/rim-9 - Neurospora crassa
          Length = 705

 Score = 33.9 bits (74), Expect = 5.6
 Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 3/99 (3%)
 Frame = -3

Query: 884 RGPXXGXXRGXGPXLXXEGGXKPPXXXKGXRFVPXXRGRGFXDXGTRPXERGPXEXXPG- 708
           RG   G  RG GP     GG  PP   +G    P    RG+   G R     P +   G 
Sbjct: 337 RGGFPGPGRGGGPPQNGRGGYGPPGRGRGGYGPPP---RGYGGPGPRGGRGPPPQGYQGG 393

Query: 707 -SRQPQRXGP-XPXXQTXSXWVAAPPFXXARVESPSMRF 597
             R+P    P  P     +   + P     R +SP  +F
Sbjct: 394 PDRRPSPGAPYGPGPGVGTYGPSQPSPYANRQQSPGPQF 432


>UniRef50_UPI0000E1FA6C Cluster: PREDICTED: hypothetical protein;
           n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
           protein - Pan troglodytes
          Length = 309

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +2

Query: 137 GGRSRGGGAANPTTHVVTDRSPCRRAGGAGNCRPPLTCSGGYRKRGCITGRPGNTA 304
           G RSRG       T  +  +   R AG  G C       GG R    + G PG++A
Sbjct: 246 GSRSRGQPCCGEETEALPAKKKSRSAGKWGRCGSQDARRGGSRTEDALQGTPGSSA 301


>UniRef50_P87912 Cluster: ICP0B; n=1; Human herpesvirus 1|Rep: ICP0B
           - Human herpesvirus 1 (HHV-1) (Human herpes simplex
           virus 1)
          Length = 152

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +2

Query: 104 KRNDKGRECEFGGRSRGGGAANPTTHVVTDRSPCRRAGGA--GNCRP 238
           +R   GR    GGRSRGG      T  V    P  R GGA    C P
Sbjct: 81  RRGCWGRRAWMGGRSRGGAPPARKTPAVAGAPPLERTGGATRATCAP 127


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,956,236
Number of Sequences: 1657284
Number of extensions: 9555556
Number of successful extensions: 23027
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22922
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79932179145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)