Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F23
         (843 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   8e-04
SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_7743| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.2  

>SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 25/62 (40%), Positives = 36/62 (58%)
 Frame = -3

Query: 742 TVTXKTRSVDXRRSRKKEQNKNAATRYRQKKKAXXXXXXXXEQTLRQRHTELRGEVL*PS 563
           TV+ K ++   +R RK+ QNK+AATRYR KKK          + L + + +L+ EV   S
Sbjct: 437 TVSPKLKT-PAQRQRKRVQNKDAATRYRVKKKDEQSRLFDEAEKLEKENNKLKDEVGSLS 495

Query: 562 KE 557
           KE
Sbjct: 496 KE 497


>SB_41031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -3

Query: 727 TRSVDXRRSRKKEQNKNAATRYRQKKKAXXXXXXXXEQTLRQRHTELRGEV 575
           T   + RR  ++E+NK AA++ RQK+K          + L  ++  L+ ++
Sbjct: 94  TPEEEERRKLRRERNKVAASKCRQKRKQHVRNLVQVSEALEVQNNTLQSQI 144


>SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 715 DXRRSRKKEQNKNAATRYRQKKKAXXXXXXXXEQTLRQRHTELR 584
           D RR +  E+N+ AATR R+K+K            L   +T+L+
Sbjct: 375 DERRRKFLERNRAAATRCREKRKIWVQQLEKKADDLSNTNTQLQ 418


>SB_7743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 745 RTVTXKTRSVDXRRSRKKEQNKNAATRYRQKK 650
           RTVT KTR+    R R+ EQ KN     ++K+
Sbjct: 8   RTVTEKTRNKRDARPRQDEQGKNKENSDKRKQ 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,116,004
Number of Sequences: 59808
Number of extensions: 365916
Number of successful extensions: 610
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)